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Protein Overview: col-143

General Information:
Name(s) found: col-143 / CE13652 [WormBase]
Description(s) found:
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  • WBGene00000716 locus:col-143 status:Confirmed UniProt:O17038 protein_id:CCD68157.1 [WormBase]
  • pir||T32250 hypothetical protein T15B7.3 - Caenorhabditis elegans [NCBI NR]
  • gi|2384940|gb|AAB69959.1| Collagen protein 143, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17564306|ref|NP_504738.1| COLlagen family member (col-143) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE13652 WBGene00000716 locus:col-143 collagen status:Confirmed TR:O17038 protein_id:AAB69959.1 [wormpep150.fasta]
  • 13652 WBGene00000716 locus:col-143 collagen status:Confirmed TR:O17038 protein_id:AAB69959.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (col-143) [Caenorhabditis elegans]gi|2384940|gb|AAB69959.1| Collagen protein 143 [Caenorhabditis elegans]gi|7507860|pir||T32250 hypothetical protein T15B7.3 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:col-143 collagen status:Partially_confirmed TR:O17038 protein_id:AAB69959.1 [wormpep115.fasta.reversed]
  • CE13652 collagen status:Partially_confirmed TR:O17038 protein_id:AAB69959.1 [wormpep80.hongbin]
  • CE13652 WBGene00000716 locus:col-143 collagen status:Confirmed UniProt:O17038_CAEEL protein_id:AAB69959.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE13652 WBGene00000716 locus:col-143 collagen status:Confirmed UniProt:O17038_CAEEL protein_id:AAB69959.1| [wormORF-contam.fasta]
  • T15B7.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Collagen protein 143 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE13652 WBGene00000716 locus:col-143 collagen status:Confirmed UniProt:O17038 protein_id:AAB69959.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE13652 WBGene00000716 locus:col-143 collagen status:Confirmed UniProt:O17038 protein_id:CCD68157.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE13652 WBGene00000716 locus:col-143 status:Confirmed UniProt:O17038 protein_id:CCD68157.1 [wormpep246-ecoli-contam.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-143 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 319 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTLVTVA SAASGIAIVV CVFTVGMIFN DINSFYDEKI GELKEFKGYE QIAWQAMIPT  60
   61 TRPSSGSSFL LGRNKRQAEC NCGEQSRGCP AGPPGPPGQP GARGEAGLPG IAGQPGSGAR 120
  121 INPATGRPGF CITCPAGAPG PAGPPGAPGP KGNNGQPGAP AQSGGRGPPG PRGPAGDAGS 180
  181 PGQPGHPGSP GNPGRGGQRS RGTPGASGRP GPQGPAGAPG QPGRSGGAGT PGPQGPPGPS 240
  241 GQPGHSGNDG VPGTPGNPGA PGGDAAYCPC PARSSVMAVN RRVAVNRNVA RNRVVVRHRI 300
  301 AARRRVAVQR RARVHAQAV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..319] PSI-BLAST 33.221849 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle