YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-143
Protein type:	Globular with Signal Peptide
Type Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTLVTVA SAASGIAIVV CVFTVGMIFN DINSFYDEKI GELKEFKGYE QIAWQAMIPT  60
   61 TRPSSGSSFL LGRNKRQAEC NCGEQSRGCP AGPPGPPGQP GARGEAGLPG IAGQPGSGAR 120
  121 INPATGRPGF CITCPAGAPG PAGPPGAPGP KGNNGQPGAP AQSGGRGPPG PRGPAGDAGS 180
  181 PGQPGHPGSP GNPGRGGQRS RGTPGASGRP GPQGPAGAPG QPGRSGGAGT PGPQGPPGPS 240
  241 GQPGHSGNDG VPGTPGNPGA PGGDAAYCPC PARSSVMAVN RRVAVNRNVA RNRVVVRHRI 300
  301 AARRRVAVQR RARVHAQAV

Type	Start	End	Confidence
Signal Peptide	1	21	0.62
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	319	0.94