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View Structure Prediction Details

Protein: col-143
Organism: Caenorhabditis elegans
Length: 319 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-143.

Description E-value Query
Range
Subject
Range
gi|113461768, gi... - gi|113461768|ref|YP_719837.1| large adhesin [Haemophilus somnus 129PT], gi|112823811|gb|ABI25900.1| ...
298.0 [0..30] [317..1411]

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Predicted Domain #1
Region A:
Residues: [1-319]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASTLVTVA SAASGIAIVV CVFTVGMIFN DINSFYDEKI GELKEFKGYE QIAWQAMIPT  60
   61 TRPSSGSSFL LGRNKRQAEC NCGEQSRGCP AGPPGPPGQP GARGEAGLPG IAGQPGSGAR 120
  121 INPATGRPGF CITCPAGAPG PAGPPGAPGP KGNNGQPGAP AQSGGRGPPG PRGPAGDAGS 180
  181 PGQPGHPGSP GNPGRGGQRS RGTPGASGRP GPQGPAGAPG QPGRSGGAGT PGPQGPPGPS 240
  241 GQPGHSGNDG VPGTPGNPGA PGGDAAYCPC PARSSVMAVN RRVAVNRNVA RNRVVVRHRI 300
  301 AARRRVAVQR RARVHAQAV

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Detection Method: PSI-BLAST
Confidence: 33.221849
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle