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Protein Overview: CE10298

General Information:
Name(s) found: CE10298 [WormBase]
Description(s) found:
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  • WBGene00009628 locus:tatn-1 status:Confirmed UniProt:Q93703 protein_id:CAB03090.1 [WormBase]
  • pir||T22087 hypothetical protein F42D1.2 - Caenorhabditis elegans [NCBI NR]
  • gi|3876971|emb|CAB03090.1| C. elegans protein F42D1.2, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17567663|ref|NP_510454.1| hypothetical protein F42D1.2 [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE10298 WBGene00009628 tyrosine aminotransferase status:Partially_confirmed TR:Q93703 protein_id:CAB03090.1 [wormpep150.fasta]
  • 10298 WBGene00009628 tyrosine aminotransferase status:Partially_confirmed TR:Q93703 protein_id:CAB03090.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • tyrosine aminotransferase (51.0 kD) (XP411) [Caenorhabditis elegans]gi|3876971|emb|CAB03090.1| Hypothetical protein F42D1.2 [Caenorhabditis elegans]gi|7503245|pir||T22087 hypothetical protein F42D1.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • tyrosine aminotransferase status:Partially_confirmed TR:Q93703 protein_id:CAB03090.1 [wormpep115.fasta.reversed]
  • CE10298 tyrosine aminotransferase status:Partially_confirmed TR:Q93703 protein_id:CAB03090.1 [wormpep80.hongbin]
  • CE10298 WBGene00009628 tyrosine aminotransferase status:Confirmed UniProt:Q93703_CAEEL protein_id:CAB03090.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE10298 WBGene00009628 tyrosine aminotransferase status:Confirmed UniProt:Q93703_CAEEL protein_id:CAB03090.1| [wormORF-contam.fasta]
  • Hypothetical protein F42D1.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • F42D1.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE10298 WBGene00009628 tyrosine aminotransferase status:Confirmed TR:Q93703 protein_id:CAB03090.1 [WormBase_C-elegans_wp180_08-19-2007_reversed.fasta]
  • CE10298 WBGene00009628 locus:tatn-1 tyrosine aminotransferase status:Confirmed UniProt:Q93703 protein_id:CAB03090.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE10298 WBGene00009628 locus:tatn-1 status:Confirmed UniProt:Q93703 protein_id:CAB03090.1 [wormpep246-ecoli-contam.fasta]
  • Tyrosine AminoTraNsferase OS=Caenorhabditis elegans GN=tatn-1 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 464 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: aromatic amino acid family metabolic process [IEALink to PubMed article]
    cellular amino acid and derivative metabolic process [IEALink to PubMed article]
    cobalamin biosynthetic process [IEALink to PubMed article]
    biosynthetic process [IEALink to PubMed article]
    histidine biosynthetic process [IEALink to PubMed article]
    Molecular Function: pyridoxal phosphate binding [IEALink to PubMed article]
    transferase activity, transferring nitrogenous groups [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]
    L-tyrosine:2-oxoglutarate aminotransferase activity [IEALink to PubMed article]
    transaminase activity [IEALink to PubMed article]
    histidinol-phosphate transaminase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLMSHSRI TPLPGAITKE EIKNQLLVHE RRFLSKPNRK DQWNVLPQSA HSKNTVNPVR  60
   61 KIADACAVPP HPEKKVIKLH LGDPSVGGKL PPSEIAVQAM HESVSSHMFD GYGPAVGALA 120
  121 AREAIVERYS SADNVFTADD VVLASGCSHA LQMAIEAVAN AGENILVPHP GFPLYSTLCR 180
  181 PHNIVDKPYK IDMTGEDVRI DLSYMATIID DNTKAIIVNN PGNPTGGVFT KEHLEEILAF 240
  241 AHQYKLIIIA DEIYGDLVYN GATFYPLASL SPKVPIITCD GIAKRWMVPG WRLGWLIIHN 300
  301 HFGVLTDVKN GIVALSQKIV GPCSLVQGAL PKILRETPED YFVYTRNVIE TNANIVDSIL 360
  361 ADVPGMRVVK PKGAMYMMVN ISRTAYGSDV SFCQNLIREE SVFCLPGQAF SAPGYFRVVL 420
  421 TCGSEDMEEA ALRIREFCYR NFNQHSDSED SSDEGLDLSA MESD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..464] PSI-BLAST 86.221849 Alanine aminotransferase from Pyrococcus furiosus Pfu-1397077-001

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • L-aspartate:2-oxoglutarate aminotransferase activity
    		•  5.51961002550688 bayes_pls_golite062009
  • catalytic activity
    		•  2.29878871754893 bayes_pls_golite062009
  • 4-aminobutyrate transaminase activity
    		•  1.82501790383768 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor
    		•  1.63055151623667 bayes_pls_golite062009
  • glycine dehydrogenase (decarboxylating) activity
    		•  1.63055151623667 bayes_pls_golite062009
  • transferase activity
    		•  1.44093490824786 bayes_pls_golite062009
  • transferase activity, transferring nitrogenous groups
    		•  1.28316822767388 bayes_pls_golite062009
  • transaminase activity
    		•  1.24990480711889 bayes_pls_golite062009
  • hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances
    		•  0.942545094747784 bayes_pls_golite062009
  • hydrolase activity, acting on acid carbon-carbon bonds
    		•  0.845816961387768 bayes_pls_golite062009
  • binding
    		•  0.536634592992536 bayes_pls_golite062009
  • transferase activity, transferring acyl groups
    		•  0.319452731970428 bayes_pls_golite062009
  • pyridoxal phosphate binding
    		•  0.16957228630576 bayes_pls_golite062009
  • vitamin B6 binding
    		•  0.16957228630576 bayes_pls_golite062009
  • aromatic-amino-acid:2-oxoglutarate aminotransferase activity
    		•  0.0916183433120769 bayes_pls_golite062009
  • kynureninase activity
    		•  0.0900983660305177 bayes_pls_golite062009
  • cystathionine beta-lyase activity
    		•  0.0833010353195099 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.013097682076602 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle