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Protein Overview: CE09942

General Information:
Name(s) found: CE09942 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00009452 status:Confirmed UniProt:Q9XVN8 protein_id:CAB03067.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 527 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: 'de novo' pyrimidine base biosynthetic process [IEALink to PubMed article]
    tRNA processing [IEALink to PubMed article]
    UMP biosynthetic process [IEALink to PubMed article]
    Molecular Function: oxidoreductase activity [IEALink to PubMed article]
    FAD binding [IEALink to PubMed article]
    dihydroorotate dehydrogenase activity [IEALink to PubMed article]
    dihydroorotate oxidase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGETAPEGY VVEKCGESEA NEEEQTTIPE NVDPLQIFRM PKRMTLPEKQ KNSDETIEKN  60
   61 LRFWKETLEN QRITKVLAPM VDQSELAFRM FTRKYGAQLT FTPMIHAHLF VNDGTYRRNS 120
  121 LALVKADRPL VVQFCANKVD TFLAACRLVE DVCDGVDLNL GCPQMVAKRG RYGSWLQDEV 180
  181 DLICEMVSAV RDYCRLPISC KIRVRDDRQQ TVEYAKRLVD AGATMLTVHG RTRDMKGAET 240
  241 GLADWSRIRD VVEAVGSRVP VMANGNIQFP GDVERCMQAT GAVAIMSAEG LLYNPLIFDD 300
  301 ANAHVDTWKI AAEYLEYAKK FNAGTSAIRA HVFRICHHSL LEYEDLRMRV SLEHRIEDFE 360
  361 NIVEELAKRA KSDAEAGKNR EVEARTLFEN IRNGILMNAI EVSKQPHWIS KPYFRLKEVA 420
  421 KESIVGEGEK TFREKQKEKL AQTAKEMGVS MKQARKRERR QLSGARILEA KKIKFPPCAR 480
  481 CGQPAGQGCA NSKCKKCCRY QSKHELLDCK PHRYLFASQP PAVSAEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..322] PSI-BLAST 37.522879 No description for 2h8zA was found.
    2 View Details [323..527] PSI-BLAST 7.0 Solution structure of the dsRBD from hypothetical protein BAB26260

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  3.49736268261512 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.95361490759242 bayes_pls_golite062009
  • binding
    		•  2.70269289824982 bayes_pls_golite062009
  • DNA binding
    		•  1.51133867432475 bayes_pls_golite062009
  • double-stranded RNA binding
    		•  1.46317494664076 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25950932467779 bayes_pls_golite062009
  • protein binding
    		•  1.18355143131643 bayes_pls_golite062009
  • double-stranded RNA adenosine deaminase activity
    		•  0.642670918049453 bayes_pls_golite062009
  • transcription factor activity
    		•  0.42419387757895 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.248030722334756 bayes_pls_golite062009
  • protein kinase activity
    		•  0.174129357494585 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle