| Protein: | CE09942 |
| Organism: | Caenorhabditis elegans |
| Length: | 527 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE09942.
| Description | E-value | Query Range |
Subject Range |
|
|
406.0 | [0..1] | [520..1] |
|
Region A: Residues: [1-322] |
1 11 21 31 41 51
| | | | | |
1 MDGETAPEGY VVEKCGESEA NEEEQTTIPE NVDPLQIFRM PKRMTLPEKQ KNSDETIEKN 60
61 LRFWKETLEN QRITKVLAPM VDQSELAFRM FTRKYGAQLT FTPMIHAHLF VNDGTYRRNS 120
121 LALVKADRPL VVQFCANKVD TFLAACRLVE DVCDGVDLNL GCPQMVAKRG RYGSWLQDEV 180
181 DLICEMVSAV RDYCRLPISC KIRVRDDRQQ TVEYAKRLVD AGATMLTVHG RTRDMKGAET 240
241 GLADWSRIRD VVEAVGSRVP VMANGNIQFP GDVERCMQAT GAVAIMSAEG LLYNPLIFDD 300
301 ANAHVDTWKI AAEYLEYAKK FN
|
| Detection Method: |  |
| Confidence: | 37.522879 |
| Match: | 2h8zA |
| Description: | No description for 2h8zA was found. |
|
Region A: Residues: [323-527] |
1 11 21 31 41 51
| | | | | |
1 AGTSAIRAHV FRICHHSLLE YEDLRMRVSL EHRIEDFENI VEELAKRAKS DAEAGKNREV 60
61 EARTLFENIR NGILMNAIEV SKQPHWISKP YFRLKEVAKE SIVGEGEKTF REKQKEKLAQ 120
121 TAKEMGVSMK QARKRERRQL SGARILEAKK IKFPPCARCG QPAGQGCANS KCKKCCRYQS 180
181 KHELLDCKPH RYLFASQPPA VSAEN
|
| Detection Method: | |
| Confidence: | 7.0 |
| Match: | 1whnA |
| Description: | Solution structure of the dsRBD from hypothetical protein BAB26260 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 3.49736268261512 | bayes_pls_golite062009 |
| nucleic acid binding | 2.95361490759242 | bayes_pls_golite062009 |
| binding | 2.70269289824982 | bayes_pls_golite062009 |
| DNA binding | 1.51133867432475 | bayes_pls_golite062009 |
| double-stranded RNA binding | 1.46317494664076 | bayes_pls_golite062009 |
| transcription regulator activity | 1.25950932467779 | bayes_pls_golite062009 |
| protein binding | 1.18355143131643 | bayes_pls_golite062009 |
| double-stranded RNA adenosine deaminase activity | 0.642670918049453 | bayes_pls_golite062009 |
| transcription factor activity | 0.42419387757895 | bayes_pls_golite062009 |
| structural constituent of ribosome | 0.248030722334756 | bayes_pls_golite062009 |
| protein kinase activity | 0.174129357494585 | bayes_pls_golite062009 |
