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Protein Overview: sra-20

General Information:
Name(s) found: sra-20 / CE09751 [WormBase]
Description(s) found:
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  • WBGene00005046 locus:sra-20 Serpentine receptor class alpha-20 status:Partially_confirmed UniProt:O17844 protein_id:CAB07600.1 [WormBase]
  • pir||T21476 hypothetical protein F28C12.4 - Caenorhabditis elegans [NCBI NR]
  • gi|74957835|sp|O17844.1|SRA20_CAEEL RecName: Full=Serpentine receptor class alpha-20; Short=Protein sra-20 [NCBI NR]
  • gi|3876458|emb|CAB07600.1| Hypothetical protein F28C12.4 [Caenorhabditis elegans] [NCBI NR]
  • gi|17506965|ref|NP_493216.1| Serpentine Receptor, class A (alpha) family member (sra-20) [Caenorhabditis elegans] [NCBI NR]
  • Serpentine receptor class alpha-20 OS=Caenorhabditis elegans GN=sra-20 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Predicted TR:O17844 protein_id:CAB07600.1 [wormpep150.fasta]
  • 09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Predicted TR:O17844 protein_id:CAB07600.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • nematode chemoreceptor, Sra family (1N287) [Caenorhabditis elegans]gi|3876458|emb|CAB07600.1| Hypothetical protein F28C12.4 [Caenorhabditis elegans]gi|7500051|pir||T21476 hypothetical protein F28C12.4 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:sra-20 7TM chemoreceptor, sra family status:Predicted TR:O17844 protein_id:CAB07600.1 [wormpep115.fasta.reversed]
  • CE09751 7tm receptor protein status:Predicted TR:O17844 protein_id:CAB07600.1 [wormpep80.hongbin]
  • CE09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Predicted UniProt:SRA20_CAEEL protein_id:CAB07600.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Predicted UniProt:SRA20_CAEEL protein_id:CAB07600.1| [wormORF-contam.fasta]
  • CE09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Predicted SW:O17844 protein_id:CAB07600.1 [wormpep160-contam.fasta]
  • Serpentine Receptor, class A (alpha) family member (sra-20) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein F28C12.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Serpentine receptor class alpha-20 (Protein sra-20) [nr-271106-contam.fasta]
  • CE09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Predicted UniProt:O17844 protein_id:CAB07600.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE09751 WBGene00005046 locus:sra-20 7TM chemoreceptor, sra family status:Partially_confirmed UniProt:O17844 protein_id:CAB07600.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE09751 WBGene00005046 locus:sra-20 status:Partially_confirmed UniProt:O17844 protein_id:CAB07600.1 Serpentine receptor class alpha-20 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 339 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEALink to PubMed article]
    Biological Process: sensory perception of chemical stimulus [IEALink to PubMed article]
    Molecular Function: transmembrane receptor activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTAEELVE SLRCASEGLT NALTSITVKV SFVFLATVIL LSYYFAVLAI RALWNNNIFS  60
   61 NSTRLILIVC LLNSVVHQST MMEIRIRQVY RSFVYSSEPC RLPFHFTDCE VELYFYYLTN 120
  121 YFSTYSVFSL TFDRLISYFF PKCYISYPYQ VSISLLIIQL VFTLGTYYFG LYGVPKLGYV 180
  181 PICNYAPRLA TNFVKINDFR TTIMVFCIIV TIFIYYLNVK SEKQIKRTSY SLGEQYLARE 240
  241 NVATSQSVCI LIVLQFVCIS VSSFGVNYIK SIKSTLSDEE YNKIAPFVVG VTYANLCLPL 300
  301 VIYFKTKLTI RKRRIRIGVM TSVYGDVGEH INRLKKSWE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..339] PSI-BLAST 46.221849 Rhodopsin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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