YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sra-20
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTAEELVE SLRCASEGLT NALTSITVKV SFVFLATVIL LSYYFAVLAI RALWNNNIFS  60
   61 NSTRLILIVC LLNSVVHQST MMEIRIRQVY RSFVYSSEPC RLPFHFTDCE VELYFYYLTN 120
  121 YFSTYSVFSL TFDRLISYFF PKCYISYPYQ VSISLLIIQL VFTLGTYYFG LYGVPKLGYV 180
  181 PICNYAPRLA TNFVKINDFR TTIMVFCIIV TIFIYYLNVK SEKQIKRTSY SLGEQYLARE 240
  241 NVATSQSVCI LIVLQFVCIS VSSFGVNYIK SIKSTLSDEE YNKIAPFVVG VTYANLCLPL 300
  301 VIYFKTKLTI RKRRIRIGVM TSVYGDVGEH INRLKKSWE

Type	Start	End	Confidence
Cytoplasmic	1	29	0.78
Transmembrane Helix	30	50	0.89
Non-Cytoplasmic	51	61	0.61
Transmembrane Helix	62	81	0.74
Cytoplasmic	82	148	0.76
Transmembrane Helix	149	171	0.85
Non-Cytoplasmic	172	198	0.96
Transmembrane Helix	199	219	0.93
Cytoplasmic	220	246	0.91
Transmembrane Helix	247	266	0.90
Non-Cytoplasmic	267	283	0.88
Transmembrane Helix	284	304	0.93
Cytoplasmic	305	339	0.94