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Protein Overview: hil-1

General Information:
Name(s) found: hil-1 / CE08476 [WormBase]
Description(s) found:
Found 23 descriptions.
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  • WBGene00001852 locus:hil-1 Histone H1.X status:Confirmed UniProt:Q18336 protein_id:CAB01632.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 232 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    intermediate filament cytoskeleton [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article]
    nucleosome [IEALink to PubMed article]
    Biological Process: DNA repair [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    nucleosome assembly [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTSLIHMAN HLDASTEEIS LNYVLLGHPH HERAQHHPSY MDMIKGAIQA IDNGTGSSKA  60
   61 AILKYIAQNY HVGENLPKVN NHLRSVLKKA VDSGDIEQTR GHGATGSFRM GKECEKNLQV 120
  121 GIPVQTKPML MLKEVRQKLE NISKAEKTKP STSSMSTNKK GKPISTMKKR GVMSKKRSSK 180
  181 NKMAPKAKSH GLKKKGPATK SSGLVHKAAG AKNEAAPTTK MELRTGTRKS YC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..115] PSI-BLAST 8.522879 Histone H5, globular domain
    2 View Details [116..232] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.70447500820585 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.25012693805862 bayes_pls_golite062009
  • DNA binding
    		•  1.08156536381633 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.921895790886353 bayes_pls_golite062009
  • transcription factor activity
    		•  0.609796449876546 bayes_pls_golite062009
  • protein binding
    		•  0.0158939338009019 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle