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Protein Overview: dsc-1

General Information:
Name(s) found: dsc-1 / CE08308 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00001096 locus:dsc-1 Homeobox protein dsc-1 status:Partially_confirmed UniProt:Q93246 protein_id:CAA20928.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 310 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    defecation [IMPLink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPHTNLNNV FDFPDLPMLL PKSEALSVTT DFSVPPVQQG AQQFHPPRNL GPQLARRWSC  60
   61 GDSQHADEPP ASYYHNLGVA LHNHFQMSNQ HYLSDFDCPT TVSPISSAHE TGQLPQLSPY 120
  121 DHIGNQDPHM FSPHAYGNSM IPDNSYFENA SRSISAPNVG NSTLNPSLMS SDNAQSCGGR 180
  181 RRFRTNFTEL QSTFLEDSFK ESHYPDHKAK KYMADFLKIP EDRITVWFQN RRAKWRRKEH 240
  241 RQRDRTRNES FSGGSNSFDF ACFSAQHPDD GPNAKHPNSF GIPNQPMSLD QFPMNTEQDF 300
  301 PEFPSLQEHQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..158] MSA 8.200997 View MSA. No confident structure predictions are available.
    2 View Details [159..310] PSI-BLAST 25.69897 Paired protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • binding
    		•  1.20352928045795 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.835457558255133 bayes_pls_golite062009
  • DNA binding
    		•  0.655670804261679 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.439599063396733 bayes_pls_golite062009
  • transcription factor activity
    		•  0.345340917029646 bayes_pls_golite062009
  • protein binding
    		•  0.0926151783365978 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle