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Protein Overview: CE07920

General Information:
Name(s) found: CE07920 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00015461 KRR1 small subunit processome component status:Confirmed UniProt:O16311 protein_id:CCD63088.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 370 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    oviposition [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVDKKAKP RGEYEPEWAG EPEEEKKTRK ETAKMFGPQK DAEWWDINTF SKEDNPNGLL  60
   61 QESSFSSLFP KYREKYIKES WPLIEKALGE HFLKADLDLL EGTMCVRTTR KTWDPYIIMK 120
  121 AREVIKLLSR SVPYEQAIRV LEDEIYCEII KISSMVRNKE RFVKRRARLI GNDGATLKAL 180
  181 ELLTQCYVCV QGGTVCAVGP LAGLKQINQI VTDCMKNIHP IYNIKTMMIK RELSKNDELK 240
  241 DANWDAYLPN YRKKVQSATT TKEAKKKKAY KMKPKKEFTP FPPAPVMSKI DKQIESGEYF 300
  301 IRENERKMNK KRAKLEASAV KTVEKQKQKL KVYQAKEEAP REKQNKKRPN DAPIDLEKLK 360
  361 KKAKLSKAAK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..58] MSA 2.131994 View MSA. No confident structure predictions are available.
    2 View Details [59..262] PSI-BLAST 33.522879 Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix
    3 View Details [263..370] MSA 1.034985 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • RNA binding
    		•  6.07437653952404 bayes_pls_golite062009
  • mRNA binding
    		•  4.07599584461947 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.68444148122352 bayes_pls_golite062009
  • binding
    		•  3.26114631106474 bayes_pls_golite062009
    		• 1.56143840583911 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.43703138180882 bayes_pls_golite062009
  • DNA binding
    		•  1.20852534725468 bayes_pls_golite062009
  • protein binding
    		•  1.06558436580734 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.9296581376632 bayes_pls_golite062009
  • transcription factor activity
    		•  0.386248501195543 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  0.3686746342524 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.32222928997178 bayes_pls_golite062009
  • catalytic activity
    		•  0.113112541746059 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.1069917291606 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle