| Protein: | CE07920 |
| Organism: | Caenorhabditis elegans |
| Length: | 370 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE07920.
| Description | E-value | Query Range |
Subject Range |
|
|
389.0 | [0..8] | [359..2] |
|
Region A: Residues: [1-58] |
1 11 21 31 41 51
| | | | | |
1 MSNVDKKAKP RGEYEPEWAG EPEEEKKTRK ETAKMFGPQK DAEWWDINTF SKEDNPNG
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [59-262] |
1 11 21 31 41 51
| | | | | |
1 LLQESSFSSL FPKYREKYIK ESWPLIEKAL GEHFLKADLD LLEGTMCVRT TRKTWDPYII 60
61 MKAREVIKLL SRSVPYEQAI RVLEDEIYCE IIKISSMVRN KERFVKRRAR LIGNDGATLK 120
121 ALELLTQCYV CVQGGTVCAV GPLAGLKQIN QIVTDCMKNI HPIYNIKTMM IKRELSKNDE 180
181 LKDANWDAYL PNYRKKVQSA TTTK
|
| Detection Method: | |
| Confidence: | 33.522879 |
| Match: | 1tuaA |
| Description: | Structural genomics, 1.5A crystal structure of a hypothetical protein APE0754 from Aeropyrum pernix |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 6.07437653952404 | bayes_pls_golite062009 |
| mRNA binding | 4.07599584461947 | bayes_pls_golite062009 |
| nucleic acid binding | 3.68444148122352 | bayes_pls_golite062009 |
| binding | 3.26114631106474 | bayes_pls_golite062009 |
| 1.56143840583911 | bayes_pls_golite062009 | |
| transcription regulator activity | 1.43703138180882 | bayes_pls_golite062009 |
| DNA binding | 1.20852534725468 | bayes_pls_golite062009 |
| protein binding | 1.06558436580734 | bayes_pls_golite062009 |
| poly-pyrimidine tract binding | 0.9296581376632 | bayes_pls_golite062009 |
| transcription factor activity | 0.386248501195543 | bayes_pls_golite062009 |
| single-stranded RNA binding | 0.3686746342524 | bayes_pls_golite062009 |
| structure-specific DNA binding | 0.32222928997178 | bayes_pls_golite062009 |
| catalytic activity | 0.113112541746059 | bayes_pls_golite062009 |
| single-stranded DNA binding | 0.1069917291606 | bayes_pls_golite062009 |
|
Region A: Residues: [263-370] |
1 11 21 31 41 51
| | | | | |
1 EAKKKKAYKM KPKKEFTPFP PAPVMSKIDK QIESGEYFIR ENERKMNKKR AKLEASAVKT 60
61 VEKQKQKLKV YQAKEEAPRE KQNKKRPNDA PIDLEKLKKK AKLSKAAK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
