YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: hil-5

General Information:
Name(s) found: hil-5 / CE07733 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00001856 locus:hil-5 Histone H1.5 status:Confirmed UniProt:O01833 protein_id:CCD61899.1 [WormBase]
  • pir||T15228 probable histone B0414.3 - Caenorhabditis elegans [NCBI NR]
  • gi|54035962|sp|O01833.3|H15_CAEEL RecName: Full=Histone H1.5; AltName: Full=Histone H1-like protein 5 [NCBI NR]
  • gi|2232297|gb|AAB81030.1| histone H1.5 [Caenorhabditis elegans] [NCBI NR]
  • gi|2088767|gb|AAB57720.1| Histone h1 like protein 5 [Caenorhabditis elegans] [NCBI NR]
  • gi|17505352|ref|NP_491678.1| HIstone H1 Like family member (hil-5) [Caenorhabditis elegans] [NCBI NR]
  • Histone H1.5 OS=Caenorhabditis elegans GN=hil-5 PE=2 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed SW:O01833 protein_id:AAB57720.1 [wormpep150.fasta]
  • 07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed TR:O01833 protein_id:AAB57720.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • histone H1 like, H1.5 (23.4 kD) (hil-5) [Caenorhabditis elegans]gi|2088767|gb|AAB57720.1| Histone h1 like protein 5 [Caenorhabditis elegans]gi|2232297|gb|AAB81030.1| histone H1.5 [Caenorhabditis elegans]gi|7439648|pir||T15228 probable histone B0414.3 - [nrdb_11152004_Chlamydomonas]
  • CE07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed TR:O01833 protein_id:AAB57720.1 [wormpep132.fasta]
  • 07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed SW:O01833 protein_id:AAB57720.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:hil-5 histone H1 status:Confirmed TR:O01833 protein_id:AAB57720.1 [wormpep115.fasta.reversed]
  • CE07733 histone H1 status:Confirmed TR:O01833 protein_id:AAB57720.1 [wormpep80.hongbin]
  • CE07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed UniProt:O01833 protein_id:AAB57720.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed UniProt:O01833 protein_id:AAB57720.1| [wormORF-contam.fasta]
  • histone H1.5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Histone H1.5 (Histone H1-like protein 5) [nr-271106-contam.fasta]
  • Histone h1 like protein 5 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • HIstone H1 Like family member (hil-5) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE07733 WBGene00001856 locus:hil-5 histone H1 status:Confirmed UniProt:O01833 protein_id:CCD61899.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE07733 WBGene00001856 locus:hil-5 status:Confirmed UniProt:O01833 protein_id:CCD61899.1 Histone H1.5 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 225 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    nucleosome [IEALink to PubMed article]
    Biological Process: nucleosome assembly [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVAVAETP AVKTPTKASK ATKAKATKIP KVKVVAAHPP FINMITEAVS NLKDRKGSSR  60
   61 VAIFKFITAK YTLGDQVNKT NAHLRSALKK GVVSKVLVQT NGIGANGRFR LAVAEKPPAV 120
  121 KKAATGEQKV MKTVAKKAVS GDKAKKTVAK KTGDKVKKVK SPKRIAKPAV KKVTKKAAAP 180
  181 TKSAANETAP KKAAATEAAP KKAAVTKAAT KKTPARKAVG TAPKA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..156] PSI-BLAST 7.69897 Histone H5, globular domain
    2 View Details [157..225] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle