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Protein Overview: CE06742

General Information:
Name(s) found: CE06742 [WormBase]
Description(s) found:
Found 19 descriptions.
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  • WBGene00015296 status:Confirmed UniProt:Q17558 protein_id:CCD62404.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 481 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    positive regulation of transcription [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]
    transcription activator activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLKPVKPE GVQSEFSVRV AKRSDDIRYS VMMFNGMDKV DTSKWTIDSG VTMEREDNQR  60
   61 VILSTQTVQE YGEGSEYGKA AREEARRKKY GRQSKKYRLD NQPWKMAFTE PEGRQRQMRG 120
  121 IREGGANEHA DYWVFLKPNQ SSEFKAYKVD EWHKFLPAIT HKTLDIDQAE EQFSQRYKVM 180
  181 NQFALKAAIQ NQLSATDESE MTEQQKRLLK IKDEASSDDS DGDDEGEGGD DGKKAKNKKK 240
  241 KKKNAKPAKE KRQRVEDKDD VAKYESSDGE DEGREYDYIS DSGTDSDREQ VPSDEKIEKQ 300
  301 LVGVAEEEGA RESDSSESED DLTKKLMKPY GDKKKGNDIE ERDSSGTDSD VSDTEKLDSV 360
  361 VFMKANKDGE GGSGGTGKKR PPTEDSDLKM DNLGPSDAKK AKPAVKFEEG LNEETVRRYL 420
  421 RRKPHTTKEL LHKMNGKCGN MSKSEMVTQL ASILKAIEPN QSRQLKGKKE VLFFSLVNTI 480
  481 A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..191] PSI-BLAST 43.69897 TFIIF alpha subunit, Rap74
    2 View Details [192..372] MSA 1.104993 View MSA. No confident structure predictions are available.
    3 View Details [373..481] PSI-BLAST 15.154902 C-terminal domain of the rap74 subunit of TFIIF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.635056919936313 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.39007787114886 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  0.33823097458615 bayes_pls_golite062009
  • protein binding
    		•  0.036066227704511 bayes_pls_golite062009
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  2.04426015975991 bayes_pls_golite062009
  • binding
    		•  1.99063774159045 bayes_pls_golite062009
  • DNA binding
    		•  1.63968725174405 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.51035375793093 bayes_pls_golite062009
  • transcription factor activity
    		•  1.16072080355661 bayes_pls_golite062009
  • transcription activator activity
    		•  0.14130464856269 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.13573040816325 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle