| Protein: | CE06742 |
| Organism: | Caenorhabditis elegans |
| Length: | 481 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE06742.
| Description | E-value | Query Range |
Subject Range |
|
|
258.0 | [0..1] | [475..102] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MSGLKPVKPE GVQSEFSVRV AKRSDDIRYS VMMFNGMDKV DTSKWTIDSG VTMEREDNQR 60
61 VILSTQTVQE YGEGSEYGKA AREEARRKKY GRQSKKYRLD NQPWKMAFTE PEGRQRQMRG 120
121 IREGGANEHA DYWVFLKPNQ SSEFKAYKVD EWHKFLPAIT HKTLDIDQAE EQFSQRYKVM 180
181 NQFALKAAIQ N
|
| Detection Method: |  |
| Confidence: | 43.69897 |
| Match: | 1f3uB |
| Description: | TFIIF alpha subunit, Rap74 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.635056919936313 | bayes_pls_golite062009 |
| transcription regulator activity | 0.39007787114886 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 0.33823097458615 | bayes_pls_golite062009 |
| protein binding | 0.036066227704511 | bayes_pls_golite062009 |
|
Region A: Residues: [192-372] |
1 11 21 31 41 51
| | | | | |
1 QLSATDESEM TEQQKRLLKI KDEASSDDSD GDDEGEGGDD GKKAKNKKKK KKNAKPAKEK 60
61 RQRVEDKDDV AKYESSDGED EGREYDYISD SGTDSDREQV PSDEKIEKQL VGVAEEEGAR 120
121 ESDSSESEDD LTKKLMKPYG DKKKGNDIEE RDSSGTDSDV SDTEKLDSVV FMKANKDGEG 180
181 G
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [373-481] |
1 11 21 31 41 51
| | | | | |
1 SGGTGKKRPP TEDSDLKMDN LGPSDAKKAK PAVKFEEGLN EETVRRYLRR KPHTTKELLH 60
61 KMNGKCGNMS KSEMVTQLAS ILKAIEPNQS RQLKGKKEVL FFSLVNTIA
|
| Detection Method: | |
| Confidence: | 15.154902 |
| Match: | 1nhaA |
| Description: | C-terminal domain of the rap74 subunit of TFIIF |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 2.04426015975991 | bayes_pls_golite062009 |
| binding | 1.99063774159045 | bayes_pls_golite062009 |
| DNA binding | 1.63968725174405 | bayes_pls_golite062009 |
| nucleic acid binding | 1.51035375793093 | bayes_pls_golite062009 |
| transcription factor activity | 1.16072080355661 | bayes_pls_golite062009 |
| transcription activator activity | 0.14130464856269 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 0.13573040816325 | bayes_pls_golite062009 |
