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Protein Overview: col-146

General Information:
Name(s) found: col-146 / CE06372 [WormBase]
Description(s) found:
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  • WBGene00000719 locus:col-146 status:Confirmed UniProt:Q22260 protein_id:CAA94792.1 [WormBase]
  • pir||T24590 hypothetical protein T06E4.6 - Caenorhabditis elegans [NCBI NR]
  • gi|3879551|emb|CAA94792.1| C. elegans protein T06E4.6, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17563992|ref|NP_505484.1| COLlagen family member (col-146) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE06372 WBGene00000719 locus:col-146 collagen status:Confirmed TR:Q22260 protein_id:CAA94792.1 [wormpep150.fasta]
  • 06372 WBGene00000719 locus:col-146 collagen status:Confirmed TR:Q22260 protein_id:CAA94792.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (27.4 kD) (col-146) [Caenorhabditis elegans]gi|3879551|emb|CAA94792.1| Hypothetical protein T06E4.6 [Caenorhabditis elegans]gi|7507300|pir||T24590 hypothetical protein T06E4.6 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • locus:col-146 collagen status:Partially_confirmed TR:Q22260 protein_id:CAA94792.1 [wormpep115.fasta.reversed]
  • CE06372 collagen status:Predicted TR:Q22260 protein_id:CAA94792.1 [wormpep80.hongbin]
  • CE06372 WBGene00000719 locus:col-146 collagen status:Confirmed UniProt:Q22260_CAEEL protein_id:CAA94792.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE06372 WBGene00000719 locus:col-146 collagen status:Confirmed UniProt:Q22260_CAEEL protein_id:CAA94792.1| [wormORF-contam.fasta]
  • Hypothetical protein T06E4.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T06E4.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE06372 WBGene00000719 locus:col-146 collagen status:Confirmed UniProt:Q22260 protein_id:CAA94792.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE06372 WBGene00000719 locus:col-146 status:Confirmed UniProt:Q22260 protein_id:CAA94792.1 [wormpep246-ecoli-contam.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-146 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 290 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: phosphate transport [IEALink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTLVTIAS IGSGVAVVAC LFTVGYIFND INSFHDEVID TMTEFKFNEQ QAWNSMMKPT  60
   61 DVFGRIKRGI NKRGAQCNCG AQSNGCPAGP PGPPGQPGAQ GEAGHAGEAG KPGANGVTIG 120
  121 LTGGNGPCIT CPAGAPGPAG APGAPGPQGP SGAPGQDAVG EGPGPAGPQG PAGDAGAPGQ 180
  181 AGAPGHPGAP GQGGQRSRGT PGPAGAPGPQ GPAGGPGQPG QSGGAGAPGP AGAPGAPGGP 240
  241 GQPGQDGQPG APGNDGAPGG DAAYCPCPAR SQVVKHRKVM AHRRHAKIVA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..290] PSI-BLAST 27.0 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle