YRC Public Data Repository - Protein Structure Prediction

Protein:	col-146
Organism:	Caenorhabditis elegans
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-146.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	251.0	[0..22]	[290..1461]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	203.0	[0..23]	[281..370]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	195.0	[0..20]	[288..1861]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	173.0	[0..25]	[289..272]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	167.0	[0..40]	[286..270]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	153.0	[0..34]	[270..869]
CO4A2_ASCSU - Collagen alpha-2(IV) chain OS=Ascaris suum PE=2 SV=1	150.0	[0..23]	[289..1106]
gi\|109504401, gi... - gi\|62662987\|ref\|XP_214400.3\| PREDICTED: similar to Collagen alpha-1(IV) chain precursor [Rattus norv...	150.0	[0..23]	[289..900]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTLVTIAS IGSGVAVVAC LFTVGYIFND INSFHDEVID TMTEFKFNEQ QAWNSMMKPT  60
   61 DVFGRIKRGI NKRGAQCNCG AQSNGCPAGP PGPPGQPGAQ GEAGHAGEAG KPGANGVTIG 120
  121 LTGGNGPCIT CPAGAPGPAG APGAPGPQGP SGAPGQDAVG EGPGPAGPQG PAGDAGAPGQ 180
  181 AGAPGHPGAP GQGGQRSRGT PGPAGAPGPQ GPAGGPGQPG QSGGAGAPGP AGAPGAPGGP 240
  241 GQPGQDGQPG APGNDGAPGG DAAYCPCPAR SQVVKHRKVM AHRRHAKIVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits