YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-146
Protein type:	Globular with Signal Peptide
Type Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKTLVTIAS IGSGVAVVAC LFTVGYIFND INSFHDEVID TMTEFKFNEQ QAWNSMMKPT  60
   61 DVFGRIKRGI NKRGAQCNCG AQSNGCPAGP PGPPGQPGAQ GEAGHAGEAG KPGANGVTIG 120
  121 LTGGNGPCIT CPAGAPGPAG APGAPGPQGP SGAPGQDAVG EGPGPAGPQG PAGDAGAPGQ 180
  181 AGAPGHPGAP GQGGQRSRGT PGPAGAPGPQ GPAGGPGQPG QSGGAGAPGP AGAPGAPGGP 240
  241 GQPGQDGQPG APGNDGAPGG DAAYCPCPAR SQVVKHRKVM AHRRHAKIVA

Type	Start	End	Confidence
Signal Peptide	1	19	0.67
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	290	0.97