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Protein Overview: hil-3

General Information:
Name(s) found: hil-3 / CE04443 [WormBase]
Description(s) found:
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  • WBGene00001854 locus:hil-3 Histone H1.3 status:Confirmed UniProt:Q19743 protein_id:CCD62510.1 [WormBase]
  • pir||T16138 histone H1.3 - Caenorhabditis elegans [NCBI NR]
  • gi|54035966|sp|Q19743.3|H13_CAEEL RecName: Full=Histone H1.3; AltName: Full=Histone H1-like protein 3 [NCBI NR]
  • gi|2318033|gb|AAB66471.1| histone H1.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|17567275|ref|NP_509375.1| HIstone H1 Like family member (hil-3) [Caenorhabditis elegans] [NCBI NR]
  • gi|1118043|gb|AAA83282.1| Histone h1 like protein 3 [Caenorhabditis elegans] [NCBI NR]
  • Histone H1.3 OS=Caenorhabditis elegans GN=hil-3 PE=2 SV=3 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed SW:Q19743 protein_id:AAA83282.1 [wormpep150.fasta]
  • 04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed TR:Q19743 protein_id:AAA83282.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • histone H1 like (21.7 kD) (hil-3) [Caenorhabditis elegans]gi|1118043|gb|AAA83282.1| Histone h1 like protein 3 [Caenorhabditis elegans]gi|2318033|gb|AAB66471.1| histone H1.3 [Caenorhabditis elegans]gi|7439650|pir||T16138 histone H1.3 - Caenorhabditis el [nrdb_11152004_Chlamydomonas]
  • CE04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed TR:Q19743 protein_id:AAA83282.1 [wormpep132.fasta]
  • 04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed SW:Q19743 protein_id:AAA83282.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • locus:hil-3 histone h1 status:Confirmed TR:Q19743 protein_id:AAA83282.1 [wormpep115.fasta.reversed]
  • CE04443 histone h1 status:Confirmed TR:Q19743 protein_id:AAA83282.1 [wormpep80.hongbin]
  • CE04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed UniProt:Q19743 protein_id:AAA83282.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed UniProt:Q19743 protein_id:AAA83282.1| [wormORF-contam.fasta]
  • Histone H1.3 (Histone H1-like protein 3) [nr-271106-contam.fasta]
  • histone H1.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Histone h1 like protein 3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • HIstone H1 Like family member (hil-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE04443 WBGene00001854 locus:hil-3 histone h1 status:Confirmed UniProt:Q19743 protein_id:CCD62510.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE04443 WBGene00001854 locus:hil-3 status:Confirmed UniProt:Q19743 protein_id:CCD62510.1 Histone H1.3 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 208 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    nucleosome [IEALink to PubMed article]
    Biological Process: nucleosome assembly [IEALink to PubMed article]
    Molecular Function: DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTVVASAA VQAPAKTVKS PKAAKTTKVP KAKKPVAHPP YINMVTAAIN GLKERKGSSK  60
   61 IAILKYITKN YNVGDQIIKI NARLRDTLNK GVVSKALVQS VGTGASGRFR VTEKKAAAAK 120
  121 KPVAKKAATG EKKAKKPVAQ KAATGEKKAK KTTATKTKKT ADKVKKVKSP KKIAKPTAKK 180
  181 VAKSPAKKSA PKKAAAAKPA KKAVAPKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..124] PSI-BLAST 9.154902 Histone H5, globular domain
    2 View Details [125..208] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.835523092977445 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.4843036104266 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.37117756729668 bayes_pls_golite062009
  • DNA binding
    		•  0.3118855114645 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.69

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle