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Protein Overview: col-117

General Information:
Name(s) found: col-117 / CE03749 [WormBase]
Description(s) found:
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  • WBGene00000594 locus:col-3 status:Confirmed UniProt:G5EDG6 protein_id:CAA90997.1 [WormBase]
  • pir||T25407 hypothetical protein T28C6.4 - Caenorhabditis elegans [NCBI NR]
  • gi|3880308|emb|CAA90997.1| C. elegans protein T28C6.6, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|3880306|emb|CAA90995.1| C. elegans protein T28C6.4, confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|33188215|gb|AAP97870.1| COLlagen structural gene, probable cuticle component, from embryo to adult (28.7 kD) (col-3) [Caenorhabditis elegans] [NCBI NR]
  • gi|33188211|gb|AAP97868.1| COLlagen structural gene, probable cuticle component, from embryo to adult (28.7 kD) (col-117) [Caenorhabditis elegans] [NCBI NR]
  • gi|17542596|ref|NP_501526.1| COLlagen family member (col-117) [Caenorhabditis elegans] [NCBI NR]
  • gi|17539484|ref|NP_501527.1| COLlagen family member (col-3) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE03749 WBGene00000594 locus:col-3 cuticle collagen status:Confirmed TR:Q27318 protein_id:CAA90997.1 [wormpep150.fasta]
  • CE03749 WBGene00000691 locus:col-117 cuticle collagen status:Confirmed TR:Q27318 protein_id:CAA90995.1 [wormpep150.fasta]
  • 03749 WBGene00000594 locus:col-3 cuticle collagen status:Confirmed TR:Q27318 protein_id:CAA90997.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • 03749 WBGene00000691 locus:col-117 cuticle collagen status:Confirmed TR:Q27318 protein_id:CAA90995.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • COLlagen structural gene (col-3) [Caenorhabditis elegans]gi|17542596|ref|NP_501526.1| COLlagen structural gene (28.7 kD) (col-117) [Caenorhabditis elegans]gi|33188215|gb|AAP97870.1| COLlagen structural gene, probable cuticle component, from embryo to ad [nrdb_11152004_Chlamydomonas]
  • locus:col-3 cuticle collagen status:Confirmed TR:Q27318 protein_id:CAA90997.1 [wormpep115.fasta.reversed]
  • CE03749 cuticle collagen status:Confirmed TR:Q27318 protein_id:CAA90995.1 [wormpep80.hongbin]
  • CE03749 locus:col-3 cuticle collagen status:Predicted TR:Q27318 protein_id:CAA90997.1 [wormpep80.hongbin]
  • CE03749 WBGene00000691 locus:col-117 cuticle collagen status:Confirmed UniProt:Q27318_CAEEL protein_id:CAA90995.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03749 WBGene00000594 locus:col-3 cuticle collagen status:Confirmed UniProt:Q27318_CAEEL protein_id:CAA90997.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03749 WBGene00000594 locus:col-3 cuticle collagen status:Confirmed UniProt:Q27318_CAEEL protein_id:CAA90997.1| [wormORF-contam.fasta]
  • CE03749 WBGene00000691 locus:col-117 cuticle collagen status:Confirmed UniProt:Q27318_CAEEL protein_id:CAA90995.1| [wormORF-contam.fasta]
  • COLlagen family member (col-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • COLlagen structural gene, probable cuticle component, from embryo to adult (28.7 kD) (col-117) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • COLlagen structural gene, probable cuticle component, from embryo to adult (28.7 kD) (col-3) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T28C6.6 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • COLlagen family member (col-117) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein T28C6.4 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE03749 WBGene00000594 locus:col-3 cuticle collagen status:Confirmed UniProt:Q27318 protein_id:CAA90997.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • CE03749 WBGene00000691 locus:col-117 cuticle collagen status:Confirmed UniProt:Q27318 protein_id:CAA90995.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03749 WBGene00000691 locus:col-117 cuticle collagen status:Confirmed UniProt:G5EDG6 protein_id:CAA90995.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE03749 WBGene00000594 locus:col-3 cuticle collagen status:Confirmed UniProt:G5EDG6 protein_id:CAA90997.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE03749 WBGene00000691 locus:col-117 status:Confirmed UniProt:G5EDG6 protein_id:CAA90995.1 [wormpep246-ecoli-contam.fasta]
  • CE03749 WBGene00000594 locus:col-3 status:Confirmed UniProt:G5EDG6 protein_id:CAA90997.1 [wormpep246-ecoli-contam.fasta]
  • COLlagen OS=Caenorhabditis elegans GN=col-117 PE=1 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    phosphate transport [IEALink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    positive regulation of multicellular organism growth [IMPLink to PubMed article]
    Molecular Function: structural constituent of cuticle [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQRIKAY RFVAYSAVAF SVVAVISVCV TLPMVYNYVH HVKRTMHSEI NFCKGSAKDI  60
   61 WSEVNHLKAI PSGNRTARQA GYDAGVTGGS ASAGGCDACC LPGAAGPAGT PGKPGRPGKP 120
  121 GAPGLPGNPG RPPQQPCEPI TPPPCKPCPA GPAGAPGPAG PAGDAGANGN PGAPGNDGQP 180
  181 GAPGNKGPSG PNGNPGAPGA PGQPGQDAPS EPITPGAPGP AGPAGPQGPP GAPGQPGHDG 240
  241 QPGAPGPKGP NGNPGAPGAD GNPGAPGQAG TSGGAGEKGI CPKYCAIDGG VFFEDGTRR

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..299] PSI-BLAST 26.522879 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
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