YRC Public Data Repository - Protein Structure Prediction

Protein:	col-117
Organism:	Caenorhabditis elegans
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for col-117.

Description	E-value	Query Range	Subject Range
gi\|113461768, gi... - gi\|113461768\|ref\|YP_719837.1\| large adhesin [Haemophilus somnus 129PT], gi\|112823811\|gb\|ABI25900.1\| ...	257.0	[0..31]	[298..1519]
gi\|91083753 - gi\|91083753\|ref\|XP_971465.1\| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...	215.0	[0..31]	[297..355]
gi\|114584077 - gi\|114584077\|ref\|XP_001153230.1\| PREDICTED: alpha 3 type VI collagen isoform 1 [Pan troglodytes]	203.0	[0..28]	[298..1861]
CO6A1_CHICK - Collagen alpha-1(VI) chain OS=Gallus gallus GN=COL6A1 PE=2 SV=1	179.0	[0..33]	[298..272]
CO6A2_MOUSE - Collagen alpha-2(VI) chain OS=Mus musculus GN=Col6a2 PE=1 SV=3	177.0	[0..38]	[297..245]
gi\|25395729 - gi\|25395729\|pir\|\|H88449 protein F54D8.1 [imported] - Caenorhabditis elegans	162.0	[0..48]	[286..869]
gi\|39580175, gi\|... - gi\|39580175\|emb\|CAE56383.1\| Hypothetical protein CBG24065 [Caenorhabditis briggsae], gi\|39578930\|emb... gi\|157758929 - gi\|157758929\|ref\|XP_001671808.1\| Hypothetical protein CBG24065 [Caenorhabditis briggsae AF16]	160.0	[0..1]	[299..1]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQRIKAY RFVAYSAVAF SVVAVISVCV TLPMVYNYVH HVKRTMHSEI NFCKGSAKDI  60
   61 WSEVNHLKAI PSGNRTARQA GYDAGVTGGS ASAGGCDACC LPGAAGPAGT PGKPGRPGKP 120
  121 GAPGLPGNPG RPPQQPCEPI TPPPCKPCPA GPAGAPGPAG PAGDAGANGN PGAPGNDGQP 180
  181 GAPGNKGPSG PNGNPGAPGA PGQPGQDAPS EPITPGAPGP AGPAGPQGPP GAPGQPGHDG 240
  241 QPGAPGPKGP NGNPGAPGAD GNPGAPGQAG TSGGAGEKGI CPKYCAIDGG VFFEDGTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1y0fB
Description:	No description for 1y0fB was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits