YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	col-117
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLEQRIKAY RFVAYSAVAF SVVAVISVCV TLPMVYNYVH HVKRTMHSEI NFCKGSAKDI  60
   61 WSEVNHLKAI PSGNRTARQA GYDAGVTGGS ASAGGCDACC LPGAAGPAGT PGKPGRPGKP 120
  121 GAPGLPGNPG RPPQQPCEPI TPPPCKPCPA GPAGAPGPAG PAGDAGANGN PGAPGNDGQP 180
  181 GAPGNKGPSG PNGNPGAPGA PGQPGQDAPS EPITPGAPGP AGPAGPQGPP GAPGQPGHDG 240
  241 QPGAPGPKGP NGNPGAPGAD GNPGAPGQAG TSGGAGEKGI CPKYCAIDGG VFFEDGTRR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.82
Transmembrane Helix	12	36	0.86
Non-Cytoplasmic	37	299	0.84