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Protein Overview: alr-1

General Information:
Name(s) found: alr-1 / CE03536 [WormBase]
Description(s) found:
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  • WBGene00044330 locus:alr-1 status:Partially_confirmed UniProt:Q21836 protein_id:CAA92001.1 [WormBase]
  • pir||T24046 hypothetical protein R08B4.2 - Caenorhabditis elegans [NCBI NR]
  • gi|3878964|emb|CAA92001.1| C. elegans protein R08B4.2, partially confirmed by transcript evidence [Caenorhabditis elegans] [NCBI NR]
  • gi|17569327|ref|NP_509860.1| AristaLess (Drosophila homeodomain) Related family member (alr-1) [Caenorhabditis elegans] [NCBI NR]
  • [wormpep67.fasta]
  • CE03536 WBGene00044330 locus:alr-1 homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1 [wormpep150.fasta]
  • 03536 WBGene00011138 homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • aristaless (XL742) [Caenorhabditis elegans]gi|3878964|emb|CAA92001.1| Hypothetical protein R08B4.2 [Caenorhabditis elegans]gi|7506460|pir||T24046 hypothetical protein R08B4.2 - Caenorhabditis elegans [nrdb_11152004_Chlamydomonas]
  • CE03536 WBGene00011138 homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1 [wormpep132.fasta]
  • 03536 WBGene00044330 locus:alr-1 homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1 [wormpep150-phg-orf-ecoli-rand.fasta]
  • homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1 [wormpep115.fasta.reversed]
  • CE03536 homeobox protein (otd subfamily) status:Partially_confirmed TR:Q21836 protein_id:CAA92001.1 [wormpep80.hongbin]
  • CE03536 WBGene00044330 locus:alr-1 homeobox protein (otd subfamily) status:Partially_confirmed UniProt:Q21836_CAEEL protein_id:CAA92001.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE03536 WBGene00044330 locus:alr-1 homeobox protein (otd subfamily) status:Partially_confirmed UniProt:Q21836_CAEEL protein_id:CAA92001.1| [wormORF-contam.fasta]
  • Hypothetical protein R08B4.2 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • AristaLess (Drosophila homeodomain) Related family member (alr-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE03536 WBGene00044330 locus:alr-1 homeobox protein (otd subfamily) status:Partially_confirmed UniProt:Q21836 protein_id:CAA92001.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE03536 WBGene00044330 locus:alr-1 status:Partially_confirmed UniProt:Q21836 protein_id:CAA92001.1 [wormpep246-ecoli-contam.fasta]
  • AristaLess (Drosophila homeodomain) Related OS=Caenorhabditis elegans GN=alr-1 PE=4 SV=1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 362 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article][IEALink to PubMed article]
    Biological Process: regulation of transcription, DNA-dependent [IEALink to PubMed article]
    Molecular Function: transcription factor activity [IEALink to PubMed article]
    sequence-specific DNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPELKKEDSS KDEKDLDMNC PPLHRPNGAD LNQYSKSLME QLQAQLFANP ALQFPSFPPA  60
   61 FSIAALTNNQ HELKEDDGKK TPTGDNILEA ASVLDNRENG SPSDGTNSPD DNGKRKQRRY 120
  121 RTTFSAFQLD ELEKVFARTH YPDVFTREEL ATRVQLTEAR VQVWFQNRRA KYRKQERSST 180
  181 HHPYQAPMSI PNSNGDNPYQ MMLSQEAIFA AINQQAAAHL LNEQVRIATS DRRSQSPSVP 240
  241 VTTSSPILPT SVTPTFQNAD ALNMLFGGIT PVTQQLLYVQ QFSRAMDAFR TQLLGSVPAG 300
  301 ATAEVTDVVA LKTEDSKSNS RAGSSSPTPT ESSGAAATST SPTNFADMNS LISDVKPKEE 360
  361 SS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..107] deduced N/A No confident structure predictions are available.
    2 View Details [108..193] PSI-BLAST 23.0 Paired protein
    3 View Details [194..362] MSA 6.560993 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • transcription regulator activity
    		•  3.57523737355937 bayes_pls_golite062009
  • DNA binding
    		•  3.00143272905695 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.89825020286436 bayes_pls_golite062009
  • transcription factor activity
    		•  2.53664874743748 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.84054423341798 bayes_pls_golite062009
  • binding
    		•  1.68817361068715 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  1.56629498736977 bayes_pls_golite062009
  • transcription activator activity
    		•  1.26247803652791 bayes_pls_golite062009
  • protein binding
    		•  1.16239587634422 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.14821760889085 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle