| Protein: | alr-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 362 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alr-1.
| Description | E-value | Query Range |
Subject Range |
|
|
117.0 | [0..58] | [323..29] |
|
Region A: Residues: [1-107] |
1 11 21 31 41 51
| | | | | |
1 MPELKKEDSS KDEKDLDMNC PPLHRPNGAD LNQYSKSLME QLQAQLFANP ALQFPSFPPA 60
61 FSIAALTNNQ HELKEDDGKK TPTGDNILEA ASVLDNRENG SPSDGTN
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [108-193] |
1 11 21 31 41 51
| | | | | |
1 SPDDNGKRKQ RRYRTTFSAF QLDELEKVFA RTHYPDVFTR EELATRVQLT EARVQVWFQN 60
61 RRAKYRKQER SSTHHPYQAP MSIPNS
|
| Detection Method: | |
| Confidence: | 23.0 |
| Match: | 1fjlA |
| Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 3.57523737355937 | bayes_pls_golite062009 |
| DNA binding | 3.00143272905695 | bayes_pls_golite062009 |
| nucleic acid binding | 2.89825020286436 | bayes_pls_golite062009 |
| transcription factor activity | 2.53664874743748 | bayes_pls_golite062009 |
| transcription repressor activity | 1.84054423341798 | bayes_pls_golite062009 |
| binding | 1.68817361068715 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.56629498736977 | bayes_pls_golite062009 |
| transcription activator activity | 1.26247803652791 | bayes_pls_golite062009 |
| protein binding | 1.16239587634422 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.14821760889085 | bayes_pls_golite062009 |
|
Region A: Residues: [194-362] |
1 11 21 31 41 51
| | | | | |
1 NGDNPYQMML SQEAIFAAIN QQAAAHLLNE QVRIATSDRR SQSPSVPVTT SSPILPTSVT 60
61 PTFQNADALN MLFGGITPVT QQLLYVQQFS RAMDAFRTQL LGSVPAGATA EVTDVVALKT 120
121 EDSKSNSRAG SSSPTPTESS GAAATSTSPT NFADMNSLIS DVKPKEESS
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
