Protein: | alr-1 |
Organism: | Caenorhabditis elegans |
Length: | 362 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alr-1.
Description | E-value | Query Range |
Subject Range |
|
117.0 | [0..58] | [323..29] |
Region A: Residues: [1-107] |
1 11 21 31 41 51 | | | | | | 1 MPELKKEDSS KDEKDLDMNC PPLHRPNGAD LNQYSKSLME QLQAQLFANP ALQFPSFPPA 60 61 FSIAALTNNQ HELKEDDGKK TPTGDNILEA ASVLDNRENG SPSDGTN |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [108-193] |
1 11 21 31 41 51 | | | | | | 1 SPDDNGKRKQ RRYRTTFSAF QLDELEKVFA RTHYPDVFTR EELATRVQLT EARVQVWFQN 60 61 RRAKYRKQER SSTHHPYQAP MSIPNS |
Detection Method: | |
Confidence: | 23.0 |
Match: | 1fjlA |
Description: | Paired protein |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 3.57523737355937 | bayes_pls_golite062009 |
DNA binding | 3.00143272905695 | bayes_pls_golite062009 |
nucleic acid binding | 2.89825020286436 | bayes_pls_golite062009 |
transcription factor activity | 2.53664874743748 | bayes_pls_golite062009 |
transcription repressor activity | 1.84054423341798 | bayes_pls_golite062009 |
binding | 1.68817361068715 | bayes_pls_golite062009 |
sequence-specific DNA binding | 1.56629498736977 | bayes_pls_golite062009 |
transcription activator activity | 1.26247803652791 | bayes_pls_golite062009 |
protein binding | 1.16239587634422 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 1.14821760889085 | bayes_pls_golite062009 |
Region A: Residues: [194-362] |
1 11 21 31 41 51 | | | | | | 1 NGDNPYQMML SQEAIFAAIN QQAAAHLLNE QVRIATSDRR SQSPSVPVTT SSPILPTSVT 60 61 PTFQNADALN MLFGGITPVT QQLLYVQQFS RAMDAFRTQL LGSVPAGATA EVTDVVALKT 120 121 EDSKSNSRAG SSSPTPTESS GAAATSTSPT NFADMNSLIS DVKPKEESS |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.