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Protein Overview: scc-1

General Information:
Name(s) found: scc-1 / CE02628 [WormBase]
Description(s) found:
Found 20 descriptions.
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  • WBGene00004737 locus:scc-1 status:Confirmed UniProt:Q19325 protein_id:CCD69206.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 645 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    nuclear chromosome [IEALink to PubMed article]
    Biological Process: collagen and cuticulin-based cuticle attachment to epithelium [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed article]
    synaptonemal complex assembly [TASLink to PubMed article]
    chromosome segregation [IMPLink to PubMed article]
    meiosis [IMPLink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: damaged DNA binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFYAQFVLAK KGPLAKVWLA AHWEKKLTKA QIFETDVPQA IEEVIRPKVK MALRTVGHLL  60
   61 LGIVRIYSKK TRYLLADTNE AYQKMKINFR NGFSFEVDIP ENAEIEEDFS NFIDKYNITV 120
  121 PEFHDADYNE QLIMANVSRR EDITMKETVN FNVEFNIDAD FDGFGDEGES WQLDHLYGSV 180
  181 EPLSLRPTPQ PESLMEVERD RDVAANGTEI SRIDADSVIF SEGPTRPNLI FDNQEGGNFM 240
  241 PEMNLKVENQ TLENDGGVGP ADMFSSMIHP VREHAVADVQ NDDGMDFDYQ PFEPENVEPS 300
  301 RPQSPESFAL EPLDVEHMEG RKKRQRKARK LIVDAETMIS NDAFREQQED FSDTMRVVEM 360
  361 APPTRKMFNL CVSGDLQHLS REPGCKMFNR ELLQRYRRCL VTREFDLNYT MQELSDSSSF 420
  421 TPSMEAQAEP WEDLNLNEDI QEDIQAQGPA VDEFFNDVRM DDDDDRQPAQ EMDFGDNFDF 480
  481 PQEVEHQECA PIPIQSGFAG ENKENEDAED WSDPFGSSNS SRRGQLEAYG FGNTSTYKED 540
  541 DGKWAKRAKH ILKKVSADIE TSGQADFSSV TATAKNRKQA AEQFYSLLTL AKSQAISVDQ 600
  601 SEPYGEIVIR PGANFKEACP LSSPKPMGLG NTMENSTMRT PMRPV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..106] Pfam 62.455932 No description for PF04825.4 was found. No confident structure predictions are available.
    2 View Details [107..399] MSA 1.129996 View MSA. No confident structure predictions are available.
    3 View Details [400..499] deduced N/A No confident structure predictions are available.
    4 View Details [500..645] PSI-BLAST 13.0 Sc Smc1hd:Scc1-C complex, ATPgS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • binding
    		•  2.04123976602801 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.68038512705313 bayes_pls_golite062009
  • DNA binding
    		•  1.47502737137202 bayes_pls_golite062009
  • transcription factor activity
    		•  1.04009476736832 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.802843603200847 bayes_pls_golite062009
  • protein binding
    		•  0.058151715836892 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle