| Protein: | scc-1 |
| Organism: | Caenorhabditis elegans |
| Length: | 645 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for scc-1.
| Description | E-value | Query Range |
Subject Range |
|
|
452.0 | [0..1] | [616..1] |
|
Region A: Residues: [1-106] |
1 11 21 31 41 51
| | | | | |
1 MFYAQFVLAK KGPLAKVWLA AHWEKKLTKA QIFETDVPQA IEEVIRPKVK MALRTVGHLL 60
61 LGIVRIYSKK TRYLLADTNE AYQKMKINFR NGFSFEVDIP ENAEIE
|
| Detection Method: |  |
| Confidence: | 62.455932 |
| Match: | PF04825.4 |
| Description: | No description for PF04825.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [107-399] |
1 11 21 31 41 51
| | | | | |
1 EDFSNFIDKY NITVPEFHDA DYNEQLIMAN VSRREDITMK ETVNFNVEFN IDADFDGFGD 60
61 EGESWQLDHL YGSVEPLSLR PTPQPESLME VERDRDVAAN GTEISRIDAD SVIFSEGPTR 120
121 PNLIFDNQEG GNFMPEMNLK VENQTLENDG GVGPADMFSS MIHPVREHAV ADVQNDDGMD 180
181 FDYQPFEPEN VEPSRPQSPE SFALEPLDVE HMEGRKKRQR KARKLIVDAE TMISNDAFRE 240
241 QQEDFSDTMR VVEMAPPTRK MFNLCVSGDL QHLSREPGCK MFNRELLQRY RRC
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [400-499] |
1 11 21 31 41 51
| | | | | |
1 LVTREFDLNY TMQELSDSSS FTPSMEAQAE PWEDLNLNED IQEDIQAQGP AVDEFFNDVR 60
61 MDDDDDRQPA QEMDFGDNFD FPQEVEHQEC APIPIQSGFA
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [500-645] |
1 11 21 31 41 51
| | | | | |
1 GENKENEDAE DWSDPFGSSN SSRRGQLEAY GFGNTSTYKE DDGKWAKRAK HILKKVSADI 60
61 ETSGQADFSS VTATAKNRKQ AAEQFYSLLT LAKSQAISVD QSEPYGEIVI RPGANFKEAC 120
121 PLSSPKPMGL GNTMENSTMR TPMRPV
|
| Detection Method: | |
| Confidence: | 13.0 |
| Match: | 1w1wE |
| Description: | Sc Smc1hd:Scc1-C complex, ATPgS |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 2.04123976602801 | bayes_pls_golite062009 |
| transcription regulator activity | 1.68038512705313 | bayes_pls_golite062009 |
| DNA binding | 1.47502737137202 | bayes_pls_golite062009 |
| transcription factor activity | 1.04009476736832 | bayes_pls_golite062009 |
| nucleic acid binding | 0.802843603200847 | bayes_pls_golite062009 |
| protein binding | 0.058151715836892 | bayes_pls_golite062009 |
