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Protein Overview: lgg-1

General Information:
Name(s) found: lgg-1 / CE01849 [WormBase]
Description(s) found:
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  • WBGene00002980 locus:lgg-1 Protein lgg-1 status:Confirmed UniProt:Q09490 protein_id:CCD66037.1 [WormBase]
  • pir||T15740 hypothetical protein C32D5.9 - Caenorhabditis elegans [NCBI NR]
  • gi|746472|gb|AAC46797.1| Lc3, gabarap and gate-16 family protein 1 [Caenorhabditis elegans] [NCBI NR]
  • gi|3025287|sp|Q09490.1|LGG1_CAEEL RecName: Full=Protein lgg-1 [NCBI NR]
  • gi|17535125|ref|NP_495277.1| LC3, GABARAP and GATE-16 family member (lgg-1) [Caenorhabditis elegans] [NCBI NR]
  • gi|12232102|gb|AAG49393.1|AF326943_1 GABA A receptor-associated protein [Caenorhabditis elegans] [NCBI NR]
  • (Q09490) Hypothetical protein C32D5.9 in chromosome II [Swiss-Prot]
  • Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01849 WBGene00002980 locus:lgg-1 status:Confirmed SW:Q09490 protein_id:AAC46797.1 [wormpep150.fasta]
  • 01849 WBGene00002980 locus:lgg-1 status:Confirmed SW:Q09490 protein_id:AAC46797.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • LC3, GABARAP and GATE-16 related, GABA A receptor-associated protein homolog (14.8 kD) (lgg-1) [Caenorhabditis elegans]gi|746472|gb|AAC46797.1| Lc3, gabarap and gate-16 family protein 1 [Caenorhabditis elegans]gi|12232102|gb|AAG49393.1| GABA A receptor- [nrdb_11152004_Chlamydomonas]
  • locus:lgg-1 status:Confirmed SW:Q09490 protein_id:AAC46797.1 [wormpep115.fasta.reversed]
  • CE01849 locus:lgg-1 status:Confirmed [wormpep80.hongbin]
  • CE01849 WBGene00002980 locus:lgg-1 status:Confirmed UniProt:Q09490 protein_id:AAC46797.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01849 WBGene00002980 locus:lgg-1 status:Confirmed UniProt:Q09490 protein_id:AAC46797.1| [wormORF-contam.fasta]
  • GABA A receptor-associated protein [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • LC3, GABARAP and GATE-16 family member (lgg-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Lc3, gabarap and gate-16 family protein 1 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Protein lgg-1 [nr-271106-contam.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01849 WBGene00002980 locus:lgg-1 status:Confirmed UniProt:Q09490 protein_id:CCD66037.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE01849 WBGene00002980 locus:lgg-1 status:Confirmed UniProt:Q09490 protein_id:CCD66037.1 Protein lgg-1 [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 123 amino acids

    Gene Ontology:
    Cellular Component: cytoplasm [IDALink to PubMed article]
    autophagic vacuole [IDALink to PubMed article]
    Biological Process: dauer larval development [IGILink to PubMed article]
    autophagy [IGILink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKWAYKEENN FEKRRAEGDK IRRKYPDRIP VIVEKAPKSK LHDLDKKKYL VPSDLTVGQF  60
   61 YFLIRKRIQL RPEDALFFFV NNVIPQTMTT MGQLYQDHHE EDLFLYIAYS DESVYGGEVE 120
  121 KKE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..123] PSI-BLAST 53.045757 GABA(A) receptor associated protein GABARAP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • tubulin binding
    		•  3.8719684227967 bayes_pls_golite062009
  • small conjugating protein ligase activity
    		•  3.71144418714309 bayes_pls_golite062009
  • microtubule binding
    		•  3.61517229466799 bayes_pls_golite062009
  • ubiquitin-protein ligase activity
    		•  3.30801071565148 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.11253399564789 bayes_pls_golite062009
  • beta-tubulin binding
    		•  2.878827078106 bayes_pls_golite062009
  • binding
    		•  2.786655943372 bayes_pls_golite062009
  • acid-amino acid ligase activity
    		•  2.72499875710239 bayes_pls_golite062009
  • GABA receptor binding
    		•  2.41579236188889 bayes_pls_golite062009
  • protein tag
    		•  2.15059229834935 bayes_pls_golite062009
  • protein binding
    		•  1.86841453215444 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.42747465816672 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.32707653701567 bayes_pls_golite062009
  • DNA binding
    		•  1.22622447288034 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.87452559909702 bayes_pls_golite062009
  • signal transducer activity
    		•  0.87452559909702 bayes_pls_golite062009
  • SUMO ligase activity
    		•  0.80391127659342 bayes_pls_golite062009
  • hydrolase activity
    		•  0.79940718386175 bayes_pls_golite062009
  • ligase activity, forming carbon-nitrogen bonds
    		•  0.753885975469065 bayes_pls_golite062009
  • structural constituent of ribosome
    		•  0.599634454232833 bayes_pls_golite062009
  • structural molecule activity
    		•  0.576819726104993 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.536856055841234 bayes_pls_golite062009
  • kinase activity
    		•  0.506057697290914 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.410719674374641 bayes_pls_golite062009
  • protein kinase activity
    		•  0.325253662829604 bayes_pls_golite062009
  • enzyme binding
    		•  0.240262781026149 bayes_pls_golite062009
  • transferase activity
    		•  0.236208643697075 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle