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Protein Overview: tag-246

General Information:
Name(s) found: tag-246 / CE01687 [WormBase]
Description(s) found:
Found 21 descriptions.
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  • WBGene00044072 locus:ham-3 status:Confirmed UniProt:Q09646 protein_id:CAA87424.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 446 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: locomotory behavior [IMPLink to PubMed article]
    hermaphrodite genitalia development [IMPLink to PubMed articleLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed article]
    post-embryonic body morphogenesis [IMPLink to PubMed article]
    gamete generation [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTQARPPVP QGPRFNHPAT PQQVRRPINA PLPGQTAQIQ GNRGPQPPKK KKRYADKLIQ  60
   61 PKVRELVPES QAYMDLLAFE QKLDSTITRK KIDVQEALKR PQKIKKRLRI YISHTFIAGK 120
  121 EPEKEGDDAS VPMWELRVEG RLLDDMQHPT VGANPRPAPK RKFSSFFKSL VIELDKDIYG 180
  181 PDNHLVEWHR TPQTNETDGF QVKRPGDRPV KCTILLLLDY QPMKFKLHPR LAKVLGIAAE 240
  241 TRPRIIEALW QYIKTHKLQD PQDRDTINND LFLEQCFGVS KMRFMEIPQR LHQLLQQPDP 300
  301 LVLNHIIQRP DDGQDKTSAC YDIDVELEDP VKQQMANFVH NQTNANDIQL LDQKIFDLVD 360
  361 QINEMKLRRD FFLRFSNEPS GFIKKWVVSQ NSDLKTLTES SGDGESDRYA TTYSTTDTDE 420
  421 GVSRYMYQKI QQKRAELEQS LGIRNN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..68] MSA 4.042997 View MSA. No confident structure predictions are available.
    2 View Details [69..218] MSA 2.045994 View MSA. No confident structure predictions are available.
    3 View Details [219..309] PSI-BLAST 28.09691 Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
    4 View Details [310..385] MSA 2.06099 View MSA. No confident structure predictions are available.
    5 View Details [386..446] MSA 2.056989 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • transcription regulator activity
    		•  4.01592136607858 bayes_pls_golite062009
  • basal transcription repressor activity
    		•  3.31155980072144 bayes_pls_golite062009
  • binding
    		•  2.67987108623459 bayes_pls_golite062009
  • transcription coactivator activity
    		•  2.58234407051051 bayes_pls_golite062009
  • general RNA polymerase II transcription factor activity
    		•  2.32480271621458 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.98538788872171 bayes_pls_golite062009
  • transcription activator activity
    		•  1.83085389017135 bayes_pls_golite062009
  • transcription factor binding
    		•  1.73032563380905 bayes_pls_golite062009
  • transcription cofactor activity
    		•  1.60414428986898 bayes_pls_golite062009
  • protein binding
    		•  1.58138506346812 bayes_pls_golite062009
  • RNA polymerase II transcription factor activity
    		•  1.06026105710513 bayes_pls_golite062009
  • structural molecule activity
    		•  0.66106995897056 bayes_pls_golite062009
  • catalytic activity
    		•  0.121624777548864 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle