| Protein: | tag-246 |
| Organism: | Caenorhabditis elegans |
| Length: | 446 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for tag-246.
| Description | E-value | Query Range |
Subject Range |
|
|
660.0 | [0..3] | [446..284] |
|
Region A: Residues: [1-68] |
1 11 21 31 41 51
| | | | | |
1 MQTQARPPVP QGPRFNHPAT PQQVRRPINA PLPGQTAQIQ GNRGPQPPKK KKRYADKLIQ 60
61 PKVRELVP
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [69-218] |
1 11 21 31 41 51
| | | | | |
1 ESQAYMDLLA FEQKLDSTIT RKKIDVQEAL KRPQKIKKRL RIYISHTFIA GKEPEKEGDD 60
61 ASVPMWELRV EGRLLDDMQH PTVGANPRPA PKRKFSSFFK SLVIELDKDI YGPDNHLVEW 120
121 HRTPQTNETD GFQVKRPGDR PVKCTILLLL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [219-309] |
1 11 21 31 41 51
| | | | | |
1 DYQPMKFKLH PRLAKVLGIA AETRPRIIEA LWQYIKTHKL QDPQDRDTIN NDLFLEQCFG 60
61 VSKMRFMEIP QRLHQLLQQP DPLVLNHIIQ R
|
| Detection Method: | |
| Confidence: | 28.09691 |
| Match: | 1uhrA |
| Description: | Solution structure of the SWIB domain of mouse BRG1-associated factor 60a |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.01592136607858 | bayes_pls_golite062009 |
| basal transcription repressor activity | 3.31155980072144 | bayes_pls_golite062009 |
| binding | 2.67987108623459 | bayes_pls_golite062009 |
| transcription coactivator activity | 2.58234407051051 | bayes_pls_golite062009 |
| general RNA polymerase II transcription factor activity | 2.32480271621458 | bayes_pls_golite062009 |
| transcription repressor activity | 1.98538788872171 | bayes_pls_golite062009 |
| transcription activator activity | 1.83085389017135 | bayes_pls_golite062009 |
| transcription factor binding | 1.73032563380905 | bayes_pls_golite062009 |
| transcription cofactor activity | 1.60414428986898 | bayes_pls_golite062009 |
| protein binding | 1.58138506346812 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 1.06026105710513 | bayes_pls_golite062009 |
| structural molecule activity | 0.66106995897056 | bayes_pls_golite062009 |
| catalytic activity | 0.121624777548864 | bayes_pls_golite062009 |
|
Region A: Residues: [310-385] |
1 11 21 31 41 51
| | | | | |
1 PDDGQDKTSA CYDIDVELED PVKQQMANFV HNQTNANDIQ LLDQKIFDLV DQINEMKLRR 60
61 DFFLRFSNEP SGFIKK
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [386-446] |
1 11 21 31 41 51
| | | | | |
1 WVVSQNSDLK TLTESSGDGE SDRYATTYST TDTDEGVSRY MYQKIQQKRA ELEQSLGIRN 60
61 N
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
