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Protein Overview: cct-6

General Information:
Name(s) found: cct-6 / CE01234 [WormBase]
Description(s) found:
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  • WBGene00000381 locus:cct-6 T-complex protein 1 subunit zeta status:Confirmed UniProt:P46550 protein_id:CCD65990.1 [WormBase]
  • pir||T15943 t-complex protein homolog cct-6 - Caenorhabditis elegans [NCBI NR]
  • gi|529705|gb|AAC46642.1| Chaperonin containing tcp-1 protein 6, isoform a [Caenorhabditis elegans] [NCBI NR]
  • gi|25144678|ref|NP_741153.1| Chaperonin Containing TCP-1 family member (cct-6) [Caenorhabditis elegans] [NCBI NR]
  • gi|1174623|sp|P46550.1|TCPZ_CAEEL RecName: Full=T-complex protein 1 subunit zeta; Short=TCP-1-zeta; AltName: Full=CCT-zeta [NCBI NR]
  • T-complex protein 1 subunit zeta OS=Caenorhabditis elegans GN=cct-6 PE=1 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE01234 WBGene00000381 locus:cct-6 status:Confirmed SW:P46550 protein_id:AAC46642.1 [wormpep150.fasta]
  • 01234 WBGene00000381 locus:cct-6 status:Confirmed SW:P46550 protein_id:AAC46642.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • chaperonin Containing TCP-1 (58.9 kD) (cct-6) [Caenorhabditis elegans]gi|529705|gb|AAC46642.1| Chaperonin containing tcp-1 protein 6, isoform a [Caenorhabditis elegans]gi|7441907|pir||T15943 t-complex protein homolog cct-6 - Caenorhabditis elegansgi|11 [nrdb_11152004_Chlamydomonas]
  • locus:cct-6 status:Confirmed SW:P46550 protein_id:AAC46642.1 [wormpep115.fasta.reversed]
  • CE01234 locus:cct-6 status:Confirmed [wormpep80.hongbin]
  • CE01234 WBGene00000381 locus:cct-6 status:Confirmed UniProt:TCPZ_CAEEL protein_id:AAC46642.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE01234 WBGene00000381 locus:cct-6 status:Confirmed UniProt:TCPZ_CAEEL protein_id:AAC46642.1| [wormORF-contam.fasta]
  • Chaperonin containing tcp-1 protein 6, isoform a [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Chaperonin Containing TCP-1 family member (cct-6) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • T-complex protein 1 subunit zeta (TCP-1-zeta) (CCT-zeta) [nr-271106-contam.fasta]
  • CE01234 WBGene00000381 locus:cct-6 status:Confirmed UniProt:P46550 protein_id:AAC46642.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE01234 WBGene00000381 locus:cct-6 status:Confirmed UniProt:P46550 protein_id:CCD65990.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE01234 WBGene00000381 locus:cct-6 status:Confirmed UniProt:P46550 protein_id:CCD65990.1 T-complex protein 1 subunit zeta [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 539 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: hermaphrodite genitalia development [IMPLink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    nematode larval development [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed articleLink to PubMed articleLink to PubMed article]
    cellular protein metabolic process [IEALink to PubMed article]
    protein folding [IEALink to PubMed article]
    reproduction [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: ATP binding [IEALink to PubMed article]
    protein binding [IEALink to PubMed article]
    unfolded protein binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIQCLNPK AELARHAAAL ELNISGARGL QDVMRSNLGP KGTLKMLVSG AGDIKLTKDG  60
   61 NVLLHEMAIQ HPTASMIAKA STAQDDVTGD GTTSTVLLIG ELLKQAESLV LEGLHPRIVT 120
  121 EGFEWANTKT LELLEKFKKE APVERDLLVE VCRTALRTKL HQKLADHITE CVVDAVLAIR 180
  181 RDGEEPDLHM VEKMEMHHDS DMDTTLVRGL VLDHGARHPD MPRHVKDAYI LTCNVSLEYE 240
  241 KTEVNSGLFY KTAKEREALL AAEREFITRR VHKIIELKKK VIDNSPDGKN KGFVVINQKG 300
  301 IDPPSLDLLA SEGILALRRA KRRNMERLQL AVGGEAVNSV DDLTPEDLGW AGLVYEHSLG 360
  361 EEKYTFIEEC RAPKSVTLLI KGPNKHTITQ IKDAIHDGLR AVFNTIVDKA VLPGAAAFEI 420
  421 AAYVMLKKDV ENLKGRAKLG AEAFAQALLV IPKTLAVNGG YDAQETLVKL IEEKTAAGPD 480
  481 IAVGLDLETG GAVEPQGIWD NVTVKKNSIS SATVLACNLL LVDEVMRAGM TNLKQPQPE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..539] PSI-BLAST 137.0 Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form of single mutant)

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • unfolded protein binding
    		•  9.9038451294995 bayes_pls_golite062009
  • inorganic cation transmembrane transporter activity
    		•  3.6934849790316 bayes_pls_golite062009
  • monovalent inorganic cation transmembrane transporter activity
    		•  3.40373598585301 bayes_pls_golite062009
  • hydrogen ion transmembrane transporter activity
    		•  3.28982639907979 bayes_pls_golite062009
  • binding
    		•  3.11215702001989 bayes_pls_golite062009
  • protein binding
    		•  2.03574683256805 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  1.88769858570433 bayes_pls_golite062009
  • ATPase activity
    		•  1.85640607183492 bayes_pls_golite062009
  • pyrophosphatase activity
    		•  1.81343301131567 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides
    		•  1.79412354283105 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
    		•  1.79183933227438 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.67284737458957 bayes_pls_golite062009
  • DNA binding
    		•  1.60256620441721 bayes_pls_golite062009
  • transporter activity
    		•  1.27879339110564 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.08697283907212 bayes_pls_golite062009
  • chaperone binding
    		•  0.91200031047441 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.828920415160435 bayes_pls_golite062009
  • hydrolase activity
    		•  0.577900060851977 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.573106450426516 bayes_pls_golite062009
  • ATPase activity, coupled
    		•  0.527748436977659 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.280310103153739 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.275534581026027 bayes_pls_golite062009
  • hydrogen-exporting ATPase activity, phosphorylative mechanism
    		•  0.26275673855778 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.252704226951294 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.243984617084631 bayes_pls_golite062009
  • hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
    		•  0.205808843369749 bayes_pls_golite062009
  • ATPase activity, coupled to movement of substances
    		•  0.202279803135899 bayes_pls_golite062009
  • ATPase activity, coupled to transmembrane movement of substances
    		•  0.20198255686005 bayes_pls_golite062009
  • transferase activity
    		•  0.18639662517366 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.16424934648837 bayes_pls_golite062009
  • catalytic activity
    		•  0.107125378994589 bayes_pls_golite062009
  • kinase activity
    		•  0.0871496920547826 bayes_pls_golite062009
  • cation transmembrane transporter activity
    		•  0.0778814959589007 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle