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Protein Overview: exc-7

General Information:
Name(s) found: exc-7 / CE00983 [WormBase]
Description(s) found:
Found 18 descriptions.
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  • WBGene00001368 locus:exc-7 status:Partially_confirmed UniProt:Q20084 protein_id:CAA85327.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 456 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEALink to PubMed article]
    Biological Process: mRNA processing [IEALink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]
    RNA binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMEALLTPN NNNVPTSPVQ TTYTSTQRYC SAPNVDIGES KTNLIINYLP QGMTQEEVRS  60
   61 LFTSIGEIES CKLVRDKVTG QSLGYGFVNY VREEDALRAV SSFNGLRLQN KTIKVSYARP 120
  121 SNDQIKGSNL YVSGIPKSMT LHELESIFRP FGQIITSRIL SDNVTGLSKG VGFVRFDKKD 180
  181 EADVAIKTLN GSIPSGCSEQ ITVKFANNPA SNNPKGLLSD LEAVQQAATT LVPLSTILGA 240
  241 PTLRATAGGI GPMHHAPITS KYRYSPMGAI TAVSQPTATL PADYLTTSAL LQMSQLNALA 300
  301 GLNPFATATA VPDFTASLIA HQQQQHAVAQ QHAAQTASPP ATNGQVAGLA AHAQLSALSA 360
  361 SVAATLPPSD TAGYCLFVYN LSSDTDDTLL WQLFSQFGAI VNVKILRDLT QQCKGYAFVS 420
  421 MSNYTEAYNA MLSLNGTNLA GKTLQVVFKS STPYRA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..207] PSI-BLAST 42.39794 Hu antigen D (Hud)
    2 View Details [208..365] deduced N/A No confident structure predictions are available.
    3 View Details [366..456] PSI-BLAST 23.522879 No description for 2d9pA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  5.15097136329571 bayes_pls_golite062009
  • nucleic acid binding
    		•  4.92126426323641 bayes_pls_golite062009
  • mRNA binding
    		•  4.05281507540116 bayes_pls_golite062009
  • binding
    		•  3.64400841800969 bayes_pls_golite062009
    		• 2.83802439076672 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.92450390013691 bayes_pls_golite062009
  • DNA binding
    		•  1.8021593476478 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  1.69629099229571 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.46469774223879 bayes_pls_golite062009
  • transcription factor activity
    		•  1.15127506309683 bayes_pls_golite062009
  • protein binding
    		•  1.12215421354121 bayes_pls_golite062009
  • transcription repressor activity
    		•  1.06887262556449 bayes_pls_golite062009
  • mRNA 3'-UTR binding
    		•  0.824614388276642 bayes_pls_golite062009
  • mRNA 5'-UTR binding
    		•  0.625848256054783 bayes_pls_golite062009
  • translation repressor activity, nucleic acid binding
    		•  0.461000905454505 bayes_pls_golite062009
  • structure-specific DNA binding
    		•  0.43716526938634 bayes_pls_golite062009
  • sequence-specific DNA binding
    		•  0.383589644462932 bayes_pls_golite062009
  • snRNA binding
    		•  0.249682711188639 bayes_pls_golite062009
  • single-stranded DNA binding
    		•  0.2202184446161 bayes_pls_golite062009
  • structural molecule activity
    		•  0.166336846372115 bayes_pls_golite062009
  • translation regulator activity
    		•  0.117211881967154 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle