YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: rpia-1

General Information:
Name(s) found: rpia-1 / CE00733 [WormBase]
Description(s) found:
SHOW ONLY BEST
  • WBGene00015101 locus:rpia-1 Probable-ribose 5-phosphate isomerase status:Confirmed UniProt:P41994 protein_id:CCD61600.1 [WormBase]
  • pir||T15307 hypothetical protein B0280.3 - Caenorhabditis elegans [NCBI NR]
  • gi|500774|gb|AAA19091.1| Hypothetical protein B0280.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|17551758|ref|NP_498556.1| hypothetical protein B0280.3 [Caenorhabditis elegans] [NCBI NR]
  • gi|1173140|sp|P41994.1|RPIA_CAEEL RecName: Full=Probable-ribose 5-phosphate isomerase; AltName: Full=Phosphoriboisomerase [NCBI NR]
  • Probable-ribose 5-phosphate isomerase OS=Caenorhabditis elegans GN=rpia-1 PE=3 SV=1 [Swiss-Prot]
  • [wormpep67.fasta]
  • CE00733 WBGene00015101 status:Confirmed SW:P41994 protein_id:AAA19091.1 [wormpep150.fasta]
  • 00733 WBGene00015101 status:Confirmed SW:P41994 protein_id:AAA19091.1 [wormpep130-phg-ecoli-orf-rand.fasta]
  • ribose isomerase A (27.2 kD) (3I213) [Caenorhabditis elegans]gi|500774|gb|AAA19091.1| Hypothetical protein B0280.3 [Caenorhabditis elegans]gi|7450944|pir||T15307 hypothetical protein B0280.3 - Caenorhabditis elegansgi|1173140|sp|P41994|RPIA_CAEEL Proba [nrdb_11152004_Chlamydomonas]
  • status:Confirmed SW:P41994 protein_id:AAA19091.1 [wormpep115.fasta.reversed]
  • CE00733 status:Confirmed SW:P41994 protein_id:AAA19091.1 [wormpep80.hongbin]
  • CE00733 WBGene00015101 status:Confirmed UniProt:RPIA_CAEEL protein_id:AAA19091.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE00733 WBGene00015101 status:Confirmed UniProt:RPIA_CAEEL protein_id:AAA19091.1| [wormORF-contam.fasta]
  • B0280.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Hypothetical protein B0280.3 [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • Probable-ribose 5-phosphate isomerase (Phosphoriboisomerase) [nr-271106-contam.fasta]
  • CE00733 WBGene00015101 locus:rpia-1 status:Confirmed UniProt:P41994 protein_id:AAA19091.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE00733 WBGene00015101 locus:rpia-1 status:Confirmed UniProt:RPIA_CAEEL protein_id:AAA19091.1 [wormbase_c-elegans_197_11-26-2008_reversed.fasta]
  • CE00733 WBGene00015101 locus:rpia-1 status:Confirmed UniProt:P41994 protein_id:CCD61600.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE00733 WBGene00015101 locus:rpia-1 status:Confirmed UniProt:P41994 protein_id:CCD61600.1 Probable-ribose 5-phosphate isomerase [wormpep246-ecoli-contam.fasta]
    • Organism: Caenorhabditis elegans
    Length: 251 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: pentose-phosphate shunt, non-oxidative branch [IEALink to PubMed article]
    locomotory behavior [IMPLink to PubMed article]
    Molecular Function: ribose-5-phosphate isomerase activity [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTSTGPEAE LAPIEQAKKR AAFACGEKYV QSGCRLGVGS GSTVKYLVEY LKQGFQNGSL  60
   61 KDIICVPTSF LTKQWLIESG LPVSDLDSHP ELDVCIDGAD EVDGQFTCIK GGGGCLAQEK 120
  121 IVQTAAKNFY VIADYLKDSK HLGDRYPNVP IEVLPLAAQP LLRSIPRAEG GSCQLRQAVK 180
  181 KCGPIVTDNG NFIIDWQFEK NVSGRDWFAI QQRLANTPGI VETGLFIGCV DAVFFAYSDG 240
  241 SVKEIVNSKK H

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run hcp-2 hcp2 ip from december Cheeseman, I.M., et al. (2005)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..251] PSI-BLAST 80.69897 D-ribose-5-phosphate isomerase (RpiA), catalytic domain; D-ribose-5-phosphate isomerase (RpiA), lid domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ribose-5-phosphate isomerase activity
    		•  2.78510459473943 bayes_pls_golite062009
  • intramolecular oxidoreductase activity
    		•  2.15381323621148 bayes_pls_golite062009
  • 6-phosphogluconolactonase activity
    		•  1.97756803122763 bayes_pls_golite062009
  • intramolecular oxidoreductase activity, interconverting aldoses and ketoses
    		•  1.65800801564277 bayes_pls_golite062009
  • catalytic activity
    		•  1.31732715713197 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.15193795385115 bayes_pls_golite062009
  • binding
    		•  0.867979574569016 bayes_pls_golite062009
  • transcription regulator activity
    		•  0.527142798518238 bayes_pls_golite062009
  • DNA binding
    		•  0.465566131334457 bayes_pls_golite062009
  • glucosamine-6-phosphate deaminase activity
    		•  0.111185777194415 bayes_pls_golite062009
  • isomerase activity
    		•  0.102415560220489 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle