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Protein Overview: SPBC1289.15

General Information:
Name(s) found: SPBC1289.15 [Sanger Pombe]
Description(s) found:
Found 22 descriptions.
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  • glycoprotein [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1283 amino acids

    Gene Ontology:
    Cellular Component: external side of cell wall [NAS]
    cytoplasm [IDALink to PubMed article]
    extracellular region [ICLink to PubMed article]
    cell surface [NASLink to PubMed article]
    Biological Process: cell adhesion [NAS]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVFTDLIFL AIFAHIGKAT AKVWNRNVQG FLDLNLPNEC SQYTTIYSDG PSEYTSTLPY  60
   61 THSFSNASVY TTLITITNSQ CTGNYSTLTI SSQPLIHTNT SISKPSQTAT PQNTNTTQVS 120
  121 LTNGTTTNSY SNTNSLPITD TINGTTELII PTTSYNNQSH TLIYSTYTST YLPNSTIDLS 180
  181 ILPHSTISTL STVSINDTSA SLSKTTSPTA GTITETIVSG SVGYTSTFPA SGTTSGTVEV 240
  241 VEPTAGTITE TIVSGSVGYT STFPANGTTS GTVEVVEPTA GTITETIVSG SVGYTSTFPA 300
  301 NGTTSGTVEV VEPTAGTITE TIVSGSVGYT STFPANGTTS GTVEVVEPTA GTVTETIVSG 360
  361 SVGYTSTFPA SGTTSGTVEV VEPTAGTITE TIVSGSKAFT STFPANGTTS GTVEVVEPTA 420
  421 GTITKTIVSG SKTFTSTFPA NGTTSGTVEV VEPTAGTITE TIVSGSVGYT STFPANGTTS 480
  481 GTVEVVEPTA GTITETIVSG SKTFTSTFPA SGTTSGTVEV VEPTAGTITE TIVSGSKAFT 540
  541 STFPANGTTS GTVEVVEPTA GTITETIVSG SVGYTSTFPA SGTTSGTVEV VEPTAGTVTE 600
  601 TIVSGSVGYT STFPASGTTS GTVEVVEPTA GTVTETIVSG SVGYTSTFPA SGTTSGTVEV 660
  661 VEPTAGTITE TIVSGSKAFT STFPANGTTS GTVEVVEPTA GTITETIVSG SKTFTSTFPA 720
  721 NGTTSGTVEV VEPTAGTITE TIVSGSVGYT STFPASGTTS GTVEVVEPTA GTVTETVISG 780
  781 SVSFMSTITA HDTSSGAVIV VEPTAGTVTE TIVSGSIPFT STIPAQGTTS GTVEVVEPTA 840
  841 GTVTETIISG SVGYTSTFPA QGTTSGTVEV VEPTAGTVTE TIISGSVGYT STFPAQGTTS 900
  901 GTVEIVAPTA GTVTETIVSG SIPFTSTIPA QGTTSGTVEV VEPTAGTVTE TIISGSVGYT 960
  961 STFPAQGTTS GTVEIVAPTA GTVTETIVSG SIPFTSTIPA QGTTSGTVEV VEPTAGTVTE1020
 1021 TIISGSVGYT STFPAQGTTS GTVEVVEPTA GTVTETIVSG SIPFTSTIPA QGTTSGTVEI1080
 1081 VVPTAGTVTS TTGSGTSWFT TTVPATGTRS GSVIVVSPTA PACSSTPFAE CPNLNFNFHS1140
 1141 KNVNFPPADI RVISVTPKGN NMYDATVQFT TSSTMSKKSL SELKILGLSQ TYLLYSYNSK1200
 1201 VDNISNPGSW TSTVTVQGTS TGSYICMPHF QIQYDWCSAG VTDMSECNTW SYQKSYDYIT1260
 1261 GCNNYDNQGN SQTDASDYCW NVC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..209] deduced N/A No confident structure predictions are available.
    2 View Details [210..340] deduced N/A Confident ab initio structure predictions are available.
    3 View Details [341..435] deduced N/A No confident structure predictions are available.
    4 View Details [436..542] MSA 2.153991 View MSA. No confident structure predictions are available.
    5 View Details [543..1146] FFAS03 3.58 Actin interacting protein 1
    6 View Details [1147..1283] FFAS03 2.64 No description for 2j04B was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5
    Term Confidence Notes
  • binding
    		•  1.89952932840506 bayes_pls_golite062009
  • protein binding
    		•  1.81988423101674 bayes_pls_golite062009
  • receptor binding
    		•  0.950768110446255 bayes_pls_golite062009
  • receptor activity
    		•  0.357404862871977 bayes_pls_golite062009
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle