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Protein Overview: SPBC4F6.05c

General Information:
Name(s) found: SPBC4F6.05c [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • lectin [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 384 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    ER to Golgi transport vesicle [ISSLink to PubMed article]
    Golgi membrane [ISSLink to PubMed article]
    endoplasmic reticulum [IDALink to PubMed article]
    Golgi apparatus [IDALink to PubMed article]
    Biological Process: ER to Golgi vesicle-mediated transport [ISSLink to PubMed article]
    intracellular protein transport [ICLink to PubMed article]
    Molecular Function: sugar binding [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFCSLFHVL SFCCTLAYAV PKSQFLQLHS LSNAIPVEWK WYGSVDEDSG YVYLTSKDSN  60
   61 EARSGSLWST SVLRQVGWQL STSFVAHVSE NENTFFAIWY TSAVGSEGPV FGASDKWDGL 120
  121 LISQEIDQTG KIFVRGYLND KSFELAQFTD PDLPPFAKCT IESSPEALNN IILKYGDQSG 180
  181 LELFVNDKPC FQVKDVILPQ GYYFGVSSQS TSAKDLVALS NLNILPPDTS NNENLNPTSN 240
  241 TKQSVGDNTS PQTVIDTEGL NAIKADLAKL FNLVESQRQK MDSLHFALTN ALERLNDISS 300
  301 TSQFPSERFN ALEKLLHDSL SAQSSTADGT SKHLAEFEKE IKKAMGNAYS PYNLTNFMVF 360
  361 LLLGAIVSYG IMLVRRDRRR HKYL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..250] PSI-BLAST 59.69897 The Crystal structure of the Carbohydrate recognition domain of the glycoprotein sorting receptor p58/ERGIC-53 reveals a novel metal binding site and conformational changes associated with calcium ion binding
    2 View Details [251..384] MSA 2.099997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.52142098960755 bayes_pls_golite062009
  • transporter activity
    		•  1.29150662073327 bayes_pls_golite062009
  • protein binding
    		•  1.15590148654655 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.07075219961504 bayes_pls_golite062009
  • carbohydrate binding
    		•  0.706875336696662 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.546512480767482 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.301823428566403 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle