| Protein: | SPBC4F6.05c |
| Organism: | Schizosaccharomyces pombe |
| Length: | 384 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC4F6.05c.
| Description | E-value | Query Range |
Subject Range |
|
|
294.0 | [0..3] | [346..17] |
|
|
293.0 | [0..3] | [346..17] |
|
|
289.0 | [0..3] | [346..17] |
|
|
289.0 | [0..3] | [346..17] |
|
Region A: Residues: [1-250] |
1 11 21 31 41 51
| | | | | |
1 MKFCSLFHVL SFCCTLAYAV PKSQFLQLHS LSNAIPVEWK WYGSVDEDSG YVYLTSKDSN 60
61 EARSGSLWST SVLRQVGWQL STSFVAHVSE NENTFFAIWY TSAVGSEGPV FGASDKWDGL 120
121 LISQEIDQTG KIFVRGYLND KSFELAQFTD PDLPPFAKCT IESSPEALNN IILKYGDQSG 180
181 LELFVNDKPC FQVKDVILPQ GYYFGVSSQS TSAKDLVALS NLNILPPDTS NNENLNPTSN 240
241 TKQSVGDNTS
|
| Detection Method: |  |
| Confidence: | 59.69897 |
| Match: | 1r1zA |
| Description: | The Crystal structure of the Carbohydrate recognition domain of the glycoprotein sorting receptor p58/ERGIC-53 reveals a novel metal binding site and conformational changes associated with calcium ion binding |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 1.52142098960755 | bayes_pls_golite062009 |
| transporter activity | 1.29150662073327 | bayes_pls_golite062009 |
| protein binding | 1.15590148654655 | bayes_pls_golite062009 |
| transmembrane transporter activity | 1.07075219961504 | bayes_pls_golite062009 |
| carbohydrate binding | 0.706875336696662 | bayes_pls_golite062009 |
| substrate-specific transporter activity | 0.546512480767482 | bayes_pls_golite062009 |
| substrate-specific transmembrane transporter activity | 0.301823428566403 | bayes_pls_golite062009 |
|
Region A: Residues: [251-384] |
1 11 21 31 41 51
| | | | | |
1 PQTVIDTEGL NAIKADLAKL FNLVESQRQK MDSLHFALTN ALERLNDISS TSQFPSERFN 60
61 ALEKLLHDSL SAQSSTADGT SKHLAEFEKE IKKAMGNAYS PYNLTNFMVF LLLGAIVSYG 120
121 IMLVRRDRRR HKYL
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
