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Protein Overview: SPBC32H8.04c

General Information:
Name(s) found: SPBC32H8.04c [Sanger Pombe]
Description(s) found:
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  • gi|74581872|sp|O13610.1|FCF1_SCHPO RecName: Full=rRNA-processing protein fcf1 [NCBI NR]
  • gi|2257502|dbj|BAA21398.1| hypothetical protein YDR339c [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112402|ref|NP_595610.1| rRNA processing protein Fcf1 (predicted) [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • gi|13872522|emb|CAC37494.1| rRNA processing protein Fcf1 (predicted) [Schizosaccharomyces pombe] [NCBI NR]
  • rRNA processing protein Fcf1 [Sanger Pombe]
  • rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe GN=fcf1 PE=2 SV=1 [Swiss-Prot]
  • CONSERVED PROTEIN; SIMILAR TO S. CEREVISIAE YDR339C: O13610; [pompepVF.fasta]
  • CONSERVED HYPOTHETICAL PROTEIN; SIMILAR TO S. CEREVISIAE YDR339C: CAC37494;O13610; [pompepV13]
  • Hypothetical protein (Conserved hypothetical protein, similar to S. cerevisiae YDR339C) [pompep4896]
  • |||conserved protein [pompepnew.fasta]
  • Hypothetical protein pi019 (SPBC32H8.04c protein) (Spactokyo_453.16 protein) [4896.FASTAC]
  • |||conserved protein|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • conserved hypothetical protein; similar to S. cerevisiae YDR339C [Schizosaccharomyces pombe]gi|13872522|emb|CAC37494.1| SPBC32H8.04c [Schizosaccharomyces pombe]gi|2257502|dbj|BAA21398.1| hypothetical protein YDR339c [Schizosaccharomyces pombe] [nrdb_11152004_Chlamydomonas]
  • |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual [pompep2242005.fasta]
  • (O13610) Hypothetical protein (Conserved hypothetical protein, similar to S. cerevisiae YDR339C) [pompep4896_normal_reversed]
  • |||rRNA processing protein Fcf1 |Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPACTOKYO_453.16 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein YDR339c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC32H8.04c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • rRNA-processing protein fcf1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcf1 PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 192 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    nucleolus [IDALink to PubMed article][ISSLink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKAKTTRKF AQVKRVINLK DQRLQKKDQK KEKEKTTKNG ELVREIPQMA SNLFFQFNES  60
   61 LGPPYHVIID TNFINFCLQQ KIDLFEGLMT CLYAKTIPCI SDCVMAELEK LGIRYRIALR 120
  121 IAKDERFERL PCTHKGTYAD DCIVQRVMQH KCYLVATNDK NLKQRIRKIP GIPILSVANH 180
  181 KIRVERLVDV VD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..192] PSI-BLAST 17.522879 Hypothetical protein AF0591

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nuclease activity
    		•  2.9643999717473 bayes_pls_golite062009
  • exonuclease activity
    		•  2.73966722455965 bayes_pls_golite062009
  • endodeoxyribonuclease activity
    		•  2.32240591300465 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  2.20319910135606 bayes_pls_golite062009
  • DNA binding
    		•  2.08813762501061 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.94354032094901 bayes_pls_golite062009
  • flap endonuclease activity
    		•  1.93047867791632 bayes_pls_golite062009
  • endonuclease activity
    		•  1.76157945742159 bayes_pls_golite062009
  • 5'-3' exonuclease activity
    		•  1.66809858159343 bayes_pls_golite062009
  • endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.5104333947608 bayes_pls_golite062009
  • binding
    		•  1.47549397931841 bayes_pls_golite062009
  • catalytic activity
    		•  1.37534898662234 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  1.24621366977274 bayes_pls_golite062009
  • hydrolase activity, acting on ester bonds
    		•  1.0761952249864 bayes_pls_golite062009
  • hydrolase activity
    		•  1.02738194339641 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.756864776606945 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.74826759322705 bayes_pls_golite062009
  • 3'-5' exonuclease activity
    		•  0.50487165366129 bayes_pls_golite062009
  • 5'-3' exodeoxyribonuclease activity
    		•  0.34527101309477 bayes_pls_golite062009
  • protein binding
    		•  0.257628793674867 bayes_pls_golite062009
  • double-stranded DNA specific exodeoxyribonuclease activity
    		•  0.123105804280941 bayes_pls_golite062009
  • single-stranded DNA specific exodeoxyribonuclease activity
    		•  0.120278857913627 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle