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Protein Overview: SPBC9B6.11c

General Information:
Name(s) found: SPBC9B6.11c [Sanger Pombe]
Description(s) found:
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  • pir||T40792 hypothetical protein SPAC9B6.11c - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74639017|sp|Q9Y7M8.1|YNTB_SCHPO RecName: Full=Probable RNA exonuclease C9B6.11c [NCBI NR]
  • gi|4760349|emb|CAB42372.1| CCR4/nocturin family endoribonuclease [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19112545|ref|NP_595753.1| cr4p-like [Schizosaccharomyces pombe] [NCBI NR]
  • CCR4/nocturin family endoribonuclease [Sanger Pombe]
  • Probable RNA exonuclease C9B6.11c OS=Schizosaccharomyces pombe GN=SPBC9B6.11c PE=2 SV=1 [Swiss-Prot]
  • HYPOTHETICAL PROTEIN; CONSERVED IN S. POMBE AND S. CEREVISIAE: Q9Y7M8; [pompepVF.fasta]
  • HYPOTHETICAL PROTEIN; CONSERVED IN S. POMBE AND S. CEREVISIAE: ;N0ACC; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||cr4p-like [pompepnew.fasta]
  • SPBC9B6.11c protein [4896.FASTAC]
  • |||cr4p-like|Schizosaccharomyces pombe|chr 2|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|4760349|emb|CAB42372.1| SPBC9B6.11c [Schizosaccharomyces pombe]gi|7491291|pir||T40792 hypothetical protein SPAC9B6.11c - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • (Q9Y7M8) Hypothetical protein [pompep4896_normal_reversed]
  • |||CCR4/nocturin family endoribonuclease|Schizosaccharomyces pombe|chr 2|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • SPBC9B6.11c [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
  • hypothetical protein SPBC9B6.11c [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • |||CCR4/nocturin family endoribonuclease |Schizosaccharomyces pombe|chr 2|||Manual [Other_S_Pombe_12-15-2011_reversed.fasta]
  • Probable RNA exonuclease C9B6.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC9B6.11c PE=3 SV=1 [uniprot_sprot.fasta.20160308]
    • Organism: Schizosaccharomyces pombe
    Length: 502 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: rRNA processing [ISSLink to PubMed article]
    Molecular Function: endoribonuclease activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTCPKTCTL TLKFFIDRFH TDYRLSKLAI SFFDQKKNKM ADSIPVKKKG SAKGPPSFVT  60
   61 PEYIEKQRQK KLEKMAKKAA RKPIAPPSNA PPEFNTDFIK REMLSIPNYA PFETEKSALD 120
  121 ITIMTYNVLA QTNIRRSMFP HSGEALKWKN RSRMLANELT YYSPTLGCMQ EVDAEFVPNF 180
  181 YKKLLGGLGY ELHFIKGEGK THGIMIFWKS SLFKKVQDLT IYYDDHDELP GRMNTKNIGC 240
  241 CVRLERVDDP SRGLFLATTH LFWHPYGSYE RLRQGAILVK EVNKMAQSHP SWPVFIAGDF 300
  301 NTEPFDTNFP ALTTRPLSIC QRATDIIERS MNYVFGESEL EEKNASTKTE NDSNEDDKEE 360
  361 CQSSSTSSVP ESTASTPKKR ILHVQNDYVP HYRSFYQQHE QNPVLFSLYS VGYKLVHPEN 420
  421 AKNTFDHPAF TNWAHAYQGH LDYIFVMNRD TSLQTPENQV VEGIKLKALL RVPLPSEMKE 480
  481 AEPLEGRYPS DHVALMANVQ IV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..100] MSA 4.264995 View MSA. No confident structure predictions are available.
    2 View Details [101..413] PSI-BLAST 37.30103 EXONUCLEASE III FROM ESCHERICHIA COLI
    3 View Details [414..502] FFAS03 1.7 No description for 2ddrA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • hydrolase activity, acting on ester bonds
    		•  1.79712722403488 bayes_pls_golite062009
  • catalytic activity
    		•  1.76511376991978 bayes_pls_golite062009
  • DNA binding
    		•  1.37658575624902 bayes_pls_golite062009
  • nuclease activity
    		•  1.32173587797854 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.27522193028878 bayes_pls_golite062009
  • transcription regulator activity
    		•  1.27444635886918 bayes_pls_golite062009
  • hydrolase activity
    		•  1.26623219005539 bayes_pls_golite062009
  • binding
    		•  1.15309487870289 bayes_pls_golite062009
  • exonuclease activity
    		•  1.00241970456165 bayes_pls_golite062009
  • exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters
    		•  0.921825229691632 bayes_pls_golite062009
  • deoxyribonuclease activity
    		•  0.918937034405287 bayes_pls_golite062009
  • phosphoric ester hydrolase activity
    		•  0.483115797781113 bayes_pls_golite062009
  • phosphatase activity
    		•  0.384661571898828 bayes_pls_golite062009
  • protein binding
    		•  0.245431403492424 bayes_pls_golite062009
  • exodeoxyribonuclease activity
    		•  0.234646673057692 bayes_pls_golite062009
  • inositol or phosphatidylinositol phosphatase activity
    		•  0.228910502815798 bayes_pls_golite062009
  • exodeoxyribonuclease activity, producing 5'-phosphomonoesters
    		•  0.218294880470342 bayes_pls_golite062009
  • transcription activator activity
    		•  0.110687210838864 bayes_pls_golite062009
  • transcription cofactor activity
    		•  0.0749803326585898 bayes_pls_golite062009
  • transcription factor binding
    		•  0.0509794286384297 bayes_pls_golite062009
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle