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Protein Overview: prp38

General Information:
Name(s) found: prp38 / SPBC19C2.08 [Sanger Pombe]
Description(s) found:
Found 19 descriptions.
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  • U4/U6 x U5 tri-snRNP complex subunit Prp38 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 210 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    U4/U6 x U5 tri-snRNP complex [ISSLink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: nuclear mRNA splicing, via spliceosome [ISSLink to PubMed article]
    Molecular Function: molecular_function [ND]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFLARDYR SQGEAAHEML PTFLIGKILR ERIVDSIYWK EQCFGLNACS LVDRAVRLEY  60
   61 IGGQYGNQRP TEFICLLYKL LQIAPEKEII QQYLSIPEFK YLRALAAFYV RLTWDDVEVH 120
  121 QTLEPLLRDY RKLRIRTNSE IRLTYLDEVV DDLLNAEVVC DISLPPLRSR LQLEDLDLLE 180
  181 PLSSSSDEED DDEEQISKLE SNEGAVDRNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..210] Pfam 105.508638 No description for PF03371.6 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle