YRC Public Data Repository - Protein Structure Prediction

Protein:	prp38
Organism:	Schizosaccharomyces pombe
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for prp38.

Description	E-value	Query Range	Subject Range
gi\|55234188, gi\|... - gi\|58396598\|ref\|XP_322016.2\| ENSANGP00000012048 [Anopheles gambiae str. PEST], gi\|55234188\|gb\|EAA010...	283.0	[0..5]	[203..1]
gi\|47212452 - gi\|47212452\|emb\|CAF94104.1\| unnamed protein product [Tetraodon nigroviridis]	282.0	[0..5]	[190..1]
PR38A_XENLA - Pre-mRNA-splicing factor 38A OS=Xenopus laevis GN=prpf38a PE=2 SV=1	277.0	[0..5]	[190..1]
gi\|62649400, gi\|... - gi\|62649400\|ref\|XP_216475.2\| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast) domai...	276.0	[0..5]	[190..1]
PR38A_XENTR - Pre-mRNA-splicing factor 38A OS=Xenopus tropicalis GN=prpf38a PE=2 SV=1	276.0	[0..5]	[190..1]
gi\|114556613 - gi\|114556613\|ref\|XP_513409.2\| PREDICTED: hypothetical protein [Pan troglodytes] gi\|73977507 - gi\|73977507\|ref\|XP_532574.2\| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast) domai... PR38A_BOVIN - Pre-mRNA-splicing factor 38A OS=Bos taurus GN=PRPF38A PE=2 SV=1 CCDS567.1_1 - null gi\|149693616 - gi\|149693616\|ref\|XP_001490583.1\| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast) d... tr\|M3VYN3\|M3VYN3... - Pre-mRNA processing factor 38A OS=Felis catus GN=PRPF38A PE=4 SV=1 PR38A_PONAB - Pre-mRNA-splicing factor 38A OS=Pongo abelii GN=PRPF38A PE=2 SV=1 ENSOCUP000000008... - pep:novel chromosome:oryCun2:13:114297678:114314037:-1 gene:ENSOCUG00000000963 transcript:ENSOCUT000... PRPF38A - PRP38 pre-mRNA processing factor 38 (yeast) domain containing A ENSCJAT00000042455 - null PR38A_MACFA - Pre-mRNA-splicing factor 38A OS=Macaca fascicularis GN=PRPF38A PE=2 SV=1 PR38A_PONPY - Pre-mRNA-splicing factor 38A - Pongo pygmaeus (Orangutan)	275.0	[0..5]	[190..1]
gi\|109004796 - gi\|109004796\|ref\|XP_001111695.1\| PREDICTED: similar to PRP38 pre-mRNA processing factor 38 (yeast) d...	275.0	[0..5]	[190..1]
gi\|166158120, gi... - gi\|166158120\|ref\|NP_001107468.1\| hypothetical protein LOC100135318 [Xenopus (Silurana) tropicalis], ... PR38A_DANRE - Pre-mRNA-splicing factor 38A OS=Danio rerio GN=prpf38a PE=2 SV=1	275.0	[0..5]	[190..1]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADFLARDYR SQGEAAHEML PTFLIGKILR ERIVDSIYWK EQCFGLNACS LVDRAVRLEY  60
   61 IGGQYGNQRP TEFICLLYKL LQIAPEKEII QQYLSIPEFK YLRALAAFYV RLTWDDVEVH 120
  121 QTLEPLLRDY RKLRIRTNSE IRLTYLDEVV DDLLNAEVVC DISLPPLRSR LQLEDLDLLE 180
  181 PLSSSSDEED DDEEQISKLE SNEGAVDRNI

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	105.508638
Match:	PF03371.6
Description:	No description for PF03371.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits