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Protein Overview: cdc11

General Information:
Name(s) found: cdc11 / SPCC1739.11c [Sanger Pombe]
Description(s) found:
Found 20 descriptions.
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  • SIN component scaffold protein Cdc11 [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 1045 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed article]
    cell division site [IDALink to PubMed article]
    cytoplasm [IDALink to PubMed article]
    spindle pole body [IDALink to PubMed articleLink to PubMed article]
    Biological Process: barrier septum formation [IMPLink to PubMed article]
    cytokinesis [IMPLink to PubMed article]
    septation initiation signaling [IMPLink to PubMed article]
    cellular protein localization [IGILink to PubMed article]
    Molecular Function: protein binding [IPILink to PubMed articleLink to PubMed articleLink to PubMed article]
    structural molecule activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQLWLEHDL SEEWIPQPQE QGSDNSSEPP TTSNVNNTQS TGRGSSGTST EHGTFKKGRN  60
   61 DAPDVPQWKQ VNAKNPVARD IFARLDLENM FEESSKQSPP SKSPTKNPSK KSSNNSSRRS 120
  121 SSSVGKLSNV SNMQSSPSKD PFVSQDYEKE SISSSQFSKK YSEGSLKSQQ SNTRSNSVHE 180
  181 KQNTDHASNA SSSSSVVSSP SLKPNNTSPL KLFQGASDPF TREHLNQLTQ DVKSNSFENG 240
  241 EKQFSLPEPR RPQKPMRTTE RKASLNTKDL YQEVEEVMAR LRGRMPNSGR ESTIFLPRKL 300
  301 SGLREEEEQD EISVEVSQED SSNAFPSLSD QLHLKSLQSM KRVTSIFNDN DDSFPSASSS 360
  361 PQRQAYMTDK MPLREIDVGS SQSSSKTARL NSSPKSTLKT SSVKTRRSHS AQSSRKVSDY 420
  421 PNMVVITPAD LPEGIDTTQG SMEFDRIHNR WRRKGHDSDL GFDFETDEDA SLSHPERTIL 480
  481 FKAASTRHQA NNDPNNLEKQ QPHSFPLRKQ NVAQSEFPKH SLRDNSENAP QILSSFHDLS 540
  541 LQNESFDEMF NGRYENGSPI PFISSGSGLK SKADKDAEYS FSVSRQSIIQ ILSDVEPYEP 600
  601 FWKRIIQLDI SRRHLDSLIG LSELCPSIEE LTLEGNEIAY LTGCPVTIRD LNAVENRLSS 660
  661 LTSFSNLLNL QYLDISYNQL EDLTGLSSLI HLRELKVDSN HLWSLDGIQH LDGLLKLSAC 720
  721 NNRIKELSFT NSNLHRLEEL LLGNNEIEEI EEISSLQNLM VLQLDNNKLT NLKASQPMIH 780
  781 LRILRISNNA IHQLEVDQFP HLRTLYMDLN RFNRPPDIRR LKRLVNFSFR TQDPEASNFV 840
  841 IQPSLDIRNL YLSNNTFVTL DCKHMFLGVR YLELANVQLK EVPKYIATSM PNLRVLDLSH 900
  901 NYISDIESLK PLQMIHRLYL VGNRIKKMRN LCDILANLKQ LNVLDLRMNP LNFNIYPVID 960
  961 DSIYELSAAS KYQQSINQKG HHRKEDPQKQ WQEKELAFSS TLSEAWRTRR KMYAEAILLA1020
 1021 CPHLEWLDGS DVSQSSRAAF TKSSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..233] MSA 2.149996 View MSA. No confident structure predictions are available.
    2 View Details [234..329] deduced N/A No confident structure predictions are available.
    3 View Details [330..391] deduced N/A No confident structure predictions are available.
    4 View Details [392..494] deduced N/A No confident structure predictions are available.
    5 View Details [495..639] FFAS03 1.14 Outer arm dynein light chain 1
    6 View Details [640..1045] PSI-BLAST 31.69897 No description for 2omuA was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6
    Term Confidence Notes
  • binding
    		•  1.87302803330255 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  1.2741906444944 bayes_pls_golite062009
  • receptor activity
    		•  0.823142813332745 bayes_pls_golite062009
  • actin binding
    		•  0.666110887282576 bayes_pls_golite062009
  • protein binding
    		•  0.646159692466759 bayes_pls_golite062009
  • transmembrane receptor activity
    		•  0.569410390698942 bayes_pls_golite062009
  • signal transducer activity
    		•  0.405945668463821 bayes_pls_golite062009
  • molecular transducer activity
    		•  0.405945668463821 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.246718758617065 bayes_pls_golite062009
  • enzyme regulator activity
    		•  0.154501444195573 bayes_pls_golite062009
  • structural molecule activity
    		•  0.0451942348393715 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle