| Protein: | cdc11 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 1045 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for cdc11.
| Description | E-value | Query Range |
Subject Range |
|
|
293.0 | [0..425] | [1044..156] |
|
|
292.0 | [0..425] | [1044..147] |
|
|
276.0 | [0..425] | [1034..178] |
|
|
275.0 | [0..381] | [1043..61] |
|
Region A: Residues: [1-233] |
1 11 21 31 41 51
| | | | | |
1 MEQLWLEHDL SEEWIPQPQE QGSDNSSEPP TTSNVNNTQS TGRGSSGTST EHGTFKKGRN 60
61 DAPDVPQWKQ VNAKNPVARD IFARLDLENM FEESSKQSPP SKSPTKNPSK KSSNNSSRRS 120
121 SSSVGKLSNV SNMQSSPSKD PFVSQDYEKE SISSSQFSKK YSEGSLKSQQ SNTRSNSVHE 180
181 KQNTDHASNA SSSSSVVSSP SLKPNNTSPL KLFQGASDPF TREHLNQLTQ DVK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [234-329] |
1 11 21 31 41 51
| | | | | |
1 SNSFENGEKQ FSLPEPRRPQ KPMRTTERKA SLNTKDLYQE VEEVMARLRG RMPNSGREST 60
61 IFLPRKLSGL REEEEQDEIS VEVSQEDSSN AFPSLS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [330-391] |
1 11 21 31 41 51
| | | | | |
1 DQLHLKSLQS MKRVTSIFND NDDSFPSASS SPQRQAYMTD KMPLREIDVG SSQSSSKTAR 60
61 LN
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [392-494] |
1 11 21 31 41 51
| | | | | |
1 SSPKSTLKTS SVKTRRSHSA QSSRKVSDYP NMVVITPADL PEGIDTTQGS MEFDRIHNRW 60
61 RRKGHDSDLG FDFETDEDAS LSHPERTILF KAASTRHQAN NDP
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [495-639] |
1 11 21 31 41 51
| | | | | |
1 NNLEKQQPHS FPLRKQNVAQ SEFPKHSLRD NSENAPQILS SFHDLSLQNE SFDEMFNGRY 60
61 ENGSPIPFIS SGSGLKSKAD KDAEYSFSVS RQSIIQILSD VEPYEPFWKR IIQLDISRRH 120
121 LDSLIGLSEL CPSIEELTLE GNEIA
|
| Detection Method: | |
| Confidence: | 1.14 |
| Match: | 1m9lA |
| Description: | Outer arm dynein light chain 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [640-1045] |
1 11 21 31 41 51
| | | | | |
1 YLTGCPVTIR DLNAVENRLS SLTSFSNLLN LQYLDISYNQ LEDLTGLSSL IHLRELKVDS 60
61 NHLWSLDGIQ HLDGLLKLSA CNNRIKELSF TNSNLHRLEE LLLGNNEIEE IEEISSLQNL 120
121 MVLQLDNNKL TNLKASQPMI HLRILRISNN AIHQLEVDQF PHLRTLYMDL NRFNRPPDIR 180
181 RLKRLVNFSF RTQDPEASNF VIQPSLDIRN LYLSNNTFVT LDCKHMFLGV RYLELANVQL 240
241 KEVPKYIATS MPNLRVLDLS HNYISDIESL KPLQMIHRLY LVGNRIKKMR NLCDILANLK 300
301 QLNVLDLRMN PLNFNIYPVI DDSIYELSAA SKYQQSINQK GHHRKEDPQK QWQEKELAFS 360
361 STLSEAWRTR RKMYAEAILL ACPHLEWLDG SDVSQSSRAA FTKSSN
|
| Detection Method: | |
| Confidence: | 31.69897 |
| Match: | 2omuA |
| Description: | No description for 2omuA was found. |
| Term | Confidence | Notes |
| binding | 1.87302803330255 | bayes_pls_golite062009 |
| cytoskeletal protein binding | 1.2741906444944 | bayes_pls_golite062009 |
| receptor activity | 0.823142813332745 | bayes_pls_golite062009 |
| actin binding | 0.666110887282576 | bayes_pls_golite062009 |
| protein binding | 0.646159692466759 | bayes_pls_golite062009 |
| transmembrane receptor activity | 0.569410390698942 | bayes_pls_golite062009 |
| signal transducer activity | 0.405945668463821 | bayes_pls_golite062009 |
| molecular transducer activity | 0.405945668463821 | bayes_pls_golite062009 |
| nucleic acid binding | 0.246718758617065 | bayes_pls_golite062009 |
| enzyme regulator activity | 0.154501444195573 | bayes_pls_golite062009 |
| structural molecule activity | 0.0451942348393715 | bayes_pls_golite062009 |
