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Protein Overview: hrr1

General Information:
Name(s) found: hrr1 / SPCC1739.03 [Sanger Pombe]
Description(s) found:
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  • pir||T41111 hypothetical ATP binding protein - fission yeast (Schizosaccharomyces pombe) [NCBI NR]
  • gi|74582457|sp|O74465.1|HRR1_SCHPO RecName: Full=Helicase required for RNAi-mediated heterochromatin assembly 1 [NCBI NR]
  • gi|3581879|emb|CAA20777.1| Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 [Schizosaccharomyces pombe] [NCBI NR]
  • gi|19075911|ref|NP_588411.1| Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 [Schizosaccharomyces pombe] [NCBI NR]
  • Helicase Required for RNAi-mediated heterochromatin assembly Hrr1 [Sanger Pombe]
  • Helicase required for RNAi-mediated heterochromatin assembly 1 OS=Schizosaccharomyces pombe GN=hrr1 PE=1 SV=1 [Swiss-Prot]
  • POSSIBLY INVOLVED IN DECAY OF MRNA CONTAINING NONSENSE CODONS; SIMILAR TO S. CEREVISIAE NAM7: O74465; [pompepVF.fasta]
  • POSSIBLY INVOLVED IN DECAY OF MRNA CONTAINING NONSENSE CODONS; BY SIMILARITY TO YEAST NAM7: O74465; [pompepV13]
  • Hypothetical protein [pompep4896]
  • |||putative DEAD box helicase [pompepnew.fasta]
  • SPCC1739.03 protein [4896.FASTAC]
  • |||DEAD/DEAH box helicase (predicted)|Schizosaccharomyces pombe|chr 3|||Manual [pombe041504.fasta]
  • hypothetical protein [Schizosaccharomyces pombe]gi|3581879|emb|CAA20777.1| SPCC1739.03 [Schizosaccharomyces pombe]gi|7490670|pir||T41111 hypothetical ATP binding protein - fission yeast (Schizosaccharomyces pombe) [nrdb_11152004_Chlamydomonas]
  • |||DEAD/DEAH box helicase |Schizosaccharomyces pombe|chr 3|||Manual [pompep2242005.fasta]
  • (O74465) Hypothetical protein [pompep4896_normal_reversed]
  • |hrr1||Helicase Required for RNAi-mediated heterochromatin assembly Hrr1|Schizosaccharomyces pombe|chr 3|||Manual [SGD_S-Pombe_na_10-23-2009_con_reversed.fasta]
  • Helicase required for RNAi-mediated heterochromatin assembly 1 [nr-271106-contam.fasta]
  • hypothetical protein SPCC1739.03 [Schizosaccharomyces pombe 972h-] [nr-271106-contam.fasta]
  • SPCC1739.03 [Schizosaccharomyces pombe] [nr-271106-contam.fasta]
    • Organism: Schizosaccharomyces pombe
    Length: 1015 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDALink to PubMed articleLink to PubMed article]
    nuclear RNA-directed RNA polymerase complex [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    chromatin remodeling complex [RCALink to PubMed article]
    RNA-directed RNA polymerase complex [IDALink to PubMed article]
    Biological Process: chromatin remodeling [NAS]
    chromatin silencing at centromere [IMPLink to PubMed article]
    chromatin silencing by small RNA [IMPLink to PubMed article]
    Molecular Function: ATP binding [IEA]
    protein binding [IPILink to PubMed article]
    RNA binding [IEA]
    helicase activity [TASLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQVQDEIWK LSTLDAWEMV NKNTEVVFDE IPEPETLSEM KRHPLYSNIF NADNNTTSFT  60
   61 EQIETSETSK TQDSEGNKVD KNLKENKSIR RKRSIDNDYE LSNVKRNDIT SGKNREFENE 120
  121 HHPASDTSSW RELPSIPTLE ELTSKSVELP SNNIYGGYKS FEDYLSIHYR LLREDAVSPL 180
  181 RESVLRYKVN PNYITGSSLA VYDHVRIDGY TISSSVIAAK LSFSVRAKKK IKWATSRRLI 240
  241 SGSLVLLSND DFQTFRIGTV CARPLSGLNK HPHEIDVKFE DISISLDPRE EYVMIEATSG 300
  301 YWEAYKHVLR SLQRLSASTF PMKDYLVHCK SNQETAKHIQ NNPRIRINSI LKNNSQKIVN 360
  361 ALEPFGPGEY ILDSSQLKAY QSMLTKRLSI IQGPPGTGKS FVTLKAIETL LENTHSHVLP 420
  421 ILVACQTNHA VDQILIRLLH QGASVMRLGS RTKDPEIAAV TIFQKAKHTK HSFKAAYNEI 480
  481 RHKKQRLIKQ ITNIMHNFNL EFVTLSYLHS KGIITTSQLE SLRNNTEWIS SVAENGEKTE 540
  541 EELISIWLGD AKVELITPSE ITDGFEEELQ IDPEKLEEIQ KEAEDSGALM EEELRGKFIN 600
  601 LRCKYLFSKL TTLHEKEIDT LLTIPNIWDI PEYSRGIIYC RWLESAYAAA EKELNRLYRF 660
  661 YLKVDRERIG FSNKRAAILL RGANVIGMTT TGLNKYRDIL ERINPKICFI EEAADVLEGP 720
  721 IIPAVFPSLE QLVLIGDHKQ LRPGCSTYAL RQDPFNLSIS MFERLVENDM EYTRLTMQRR 780
  781 MHPQIRRLVS SVYEDLSDYE ITKYWPSIPG MGEIRRFFLT HSRIEDNDGF ASKINLFEAQ 840
  841 MLVQFAVYLI NNGVEPQKIT CLTFYAAQKD LIERLLSESL NREKHFIKVA TVDGYQGEEN 900
  901 DVVLLSLVRN NDRTEVGFLS SPHRVCVSLS RARRGLFIFG NAQLVAESNP LWWDAINTLM 960
  961 NDETIQGLGD HLPLFTKDGT IYVNGKKSKQ FQFNFLTHSV DPVELLDVNM RLTRK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..159] PSI-BLAST 9.154902 No description for 2iykA was found.
    2 View Details [160..353] deduced N/A No confident structure predictions are available.
    3 View Details [354..882] PSI-BLAST 54.0 DEXX box DNA helicase
    4 View Details [883..1015] PSI-BLAST 61.09691 No description for 2gjkA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle