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Protein Overview: SPCC1840.12

General Information:
Name(s) found: SPCC1840.12 [Sanger Pombe]
Description(s) found:
Found 22 descriptions.
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  • OPT oligopeptide transporter family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 791 amino acids

    Gene Ontology:
    Cellular Component: integral to plasma membrane [ISSLink to PubMed article]
    nucleus [IDALink to PubMed article]
    cytosol [IDALink to PubMed article]
    Biological Process: oligopeptide transport [ICLink to PubMed article]
    transmembrane transport [IEA]
    Molecular Function: transmembrane transporter activity [NASLink to PubMed article]
    oligopeptide transporter activity [ISSLink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPKFITYV TRGFKGLESK SVENNKDHIV ENSSPIASKF HEFDEQKKSF EIINYAGHEK  60
   61 FVDDITERES SVPGNAVYDI TVRDIDAIVP VTDDVDIPAS TFRMWILAFG LATVIAGVDA 120
  121 FFLMRYPSVS IAAIVALLVA YPLGQLWYYI IPQWEIKLPR GIRVSLNPGR FNRKEHACLY 180
  181 IFVNICVSAK LVNTLIIEQI KFFGVNIGIG RAILFNLCSY LSSFGWSGLA LPILVYPPTL 240
  241 IWPSVLSSCA LFKIFHDNDN TKACNWTISR LRYFFIVFVA SFIWYWFPDL IFPALSSLGA 300
  301 WISWCKPSSA VLSQIFGVKT GLGLFPLTLD WAQISSLSNP LITPWWATCC IFTSFVFWIW 360
  361 IVLPGLYYQN YWQVAHFPIM TNSIYTVSGK SYDAQKVVDS KWELVTQKYQ EYSPVMLPIA 420
  421 FIINIALSLG AFSSMMISFF LRFPTDVIQP ICHVFKYSDI HTKLLKKYKR VHWGFYLASI 480
  481 IVSLGLGFAF TEGWHDIQIR SYGFVVSMVI GAALYIPLSL IESRSSFTIS MQAFFEIVAA 540
  541 FWFNGQPMAL LYFYSFGFGT LQHAMHMTQS AKIGHYMKVP PRLVAALLFT SGIWSSLVNS 600
  601 AVTGWIMYHV RDVCTSNAEN NMTCRSPKTQ FNSHLIWGLV GNHIFSSDGR YSFVMWFFLV 660
  661 GAVVSVVVYL LQISFPKSSW KHVNPALLLG GAAQIPSVTG INYSTWAAVA FCFNYLIRRG 720
  721 YYSWWKKYNL ITAAAMDCGV AIAGLFIYFC VVYTGGSSNF SWWGTTVSSA GCDKKGCAHL 780
  781 SVSDISKPSG W

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..204] FFAS03 0.978 RPB6
    2 View Details [205..376] MSA 1.230969 View MSA. No confident structure predictions are available.
    3 View Details [377..468] deduced N/A No confident structure predictions are available.
    4 View Details [469..611] MSA 1.236987 View MSA. No confident structure predictions are available.
    5 View Details [612..791] MSA 3.233995 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring phosphorus-containing groups
    		•  2.01281538416671 bayes_pls_golite062009
  • binding
    		•  1.94407817286887 bayes_pls_golite062009
  • transferase activity
    		•  1.60649038965008 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.52156836827301 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.52156836827301 bayes_pls_golite062009
  • catalytic activity
    		•  0.853948963582441 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.703245359585675 bayes_pls_golite062009
  • DNA binding
    		•  0.542083591442061 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.405555358891152 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle