YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SPCC1840.12
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	103	0.96
Transmembrane Helix	104	123	0.94
Non-Cytoplasmic	124	129	0.79
Transmembrane Helix	130	151	0.94
Cytoplasmic	152	206	0.79
Transmembrane Helix	207	224	0.69
Non-Cytoplasmic	225	232	0.54
Transmembrane Helix	233	255	0.79
Cytoplasmic	256	270	0.88
Transmembrane Helix	271	288	0.92
Non-Cytoplasmic	289	309	0.76
Transmembrane Helix	310	329	0.87
Cytoplasmic	330	341	0.80
Transmembrane Helix	342	362	0.93
Non-Cytoplasmic	363	418	0.92
Transmembrane Helix	419	441	0.88
Cytoplasmic	442	471	0.96
Transmembrane Helix	472	491	0.95
Non-Cytoplasmic	492	498	0.81
Transmembrane Helix	499	521	0.88
Cytoplasmic	522	532	0.80
Transmembrane Helix	533	556	0.79
Non-Cytoplasmic	557	582	0.76
Transmembrane Helix	583	606	0.85
Cytoplasmic	607	652	0.80
Transmembrane Helix	653	673	0.95
Non-Cytoplasmic	674	692	0.75
Transmembrane Helix	693	717	0.80
Cytoplasmic	718	729	0.80
Transmembrane Helix	730	755	0.85
Non-Cytoplasmic	756	791	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTPKFITYV TRGFKGLESK SVENNKDHIV ENSSPIASKF HEFDEQKKSF EIINYAGHEK  60
   61 FVDDITERES SVPGNAVYDI TVRDIDAIVP VTDDVDIPAS TFRMWILAFG LATVIAGVDA 120
  121 FFLMRYPSVS IAAIVALLVA YPLGQLWYYI IPQWEIKLPR GIRVSLNPGR FNRKEHACLY 180
  181 IFVNICVSAK LVNTLIIEQI KFFGVNIGIG RAILFNLCSY LSSFGWSGLA LPILVYPPTL 240
  241 IWPSVLSSCA LFKIFHDNDN TKACNWTISR LRYFFIVFVA SFIWYWFPDL IFPALSSLGA 300
  301 WISWCKPSSA VLSQIFGVKT GLGLFPLTLD WAQISSLSNP LITPWWATCC IFTSFVFWIW 360
  361 IVLPGLYYQN YWQVAHFPIM TNSIYTVSGK SYDAQKVVDS KWELVTQKYQ EYSPVMLPIA 420
  421 FIINIALSLG AFSSMMISFF LRFPTDVIQP ICHVFKYSDI HTKLLKKYKR VHWGFYLASI 480
  481 IVSLGLGFAF TEGWHDIQIR SYGFVVSMVI GAALYIPLSL IESRSSFTIS MQAFFEIVAA 540
  541 FWFNGQPMAL LYFYSFGFGT LQHAMHMTQS AKIGHYMKVP PRLVAALLFT SGIWSSLVNS 600
  601 AVTGWIMYHV RDVCTSNAEN NMTCRSPKTQ FNSHLIWGLV GNHIFSSDGR YSFVMWFFLV 660
  661 GAVVSVVVYL LQISFPKSSW KHVNPALLLG GAAQIPSVTG INYSTWAAVA FCFNYLIRRG 720
  721 YYSWWKKYNL ITAAAMDCGV AIAGLFIYFC VVYTGGSSNF SWWGTTVSSA GCDKKGCAHL 780
  781 SVSDISKPSG W