| Protein: | SPCC1840.12 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 791 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1840.12.
| Description | E-value | Query Range |
Subject Range |
|
|
753.0 | [0..30] | [781..3] |
|
|
751.0 | [0..10] | [791..10] |
|
|
737.0 | [0..54] | [791..247] |
|
|
737.0 | [0..10] | [782..10] |
|
|
735.0 | [0..62] | [781..2] |
|
|
733.0 | [0..45] | [791..270] |
|
Region A: Residues: [1-204] |
1 11 21 31 41 51
| | | | | |
1 MKTPKFITYV TRGFKGLESK SVENNKDHIV ENSSPIASKF HEFDEQKKSF EIINYAGHEK 60
61 FVDDITERES SVPGNAVYDI TVRDIDAIVP VTDDVDIPAS TFRMWILAFG LATVIAGVDA 120
121 FFLMRYPSVS IAAIVALLVA YPLGQLWYYI IPQWEIKLPR GIRVSLNPGR FNRKEHACLY 180
181 IFVNICVSAK LVNTLIIEQI KFFG
|
| Detection Method: |  |
| Confidence: | 0.978 |
| Match: | 1i3qF |
| Description: | RPB6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transferase activity, transferring phosphorus-containing groups | 2.01281538416671 | bayes_pls_golite062009 |
| binding | 1.94407817286887 | bayes_pls_golite062009 |
| transferase activity | 1.60649038965008 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.52156836827301 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.52156836827301 | bayes_pls_golite062009 |
| catalytic activity | 0.853948963582441 | bayes_pls_golite062009 |
| nucleic acid binding | 0.703245359585675 | bayes_pls_golite062009 |
| DNA binding | 0.542083591442061 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.405555358891152 | bayes_pls_golite062009 |
|
Region A: Residues: [205-376] |
1 11 21 31 41 51
| | | | | |
1 VNIGIGRAIL FNLCSYLSSF GWSGLALPIL VYPPTLIWPS VLSSCALFKI FHDNDNTKAC 60
61 NWTISRLRYF FIVFVASFIW YWFPDLIFPA LSSLGAWISW CKPSSAVLSQ IFGVKTGLGL 120
121 FPLTLDWAQI SSLSNPLITP WWATCCIFTS FVFWIWIVLP GLYYQNYWQV AH
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [377-468] |
1 11 21 31 41 51
| | | | | |
1 FPIMTNSIYT VSGKSYDAQK VVDSKWELVT QKYQEYSPVM LPIAFIINIA LSLGAFSSMM 60
61 ISFFLRFPTD VIQPICHVFK YSDIHTKLLK KY
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [469-611] |
1 11 21 31 41 51
| | | | | |
1 KRVHWGFYLA SIIVSLGLGF AFTEGWHDIQ IRSYGFVVSM VIGAALYIPL SLIESRSSFT 60
61 ISMQAFFEIV AAFWFNGQPM ALLYFYSFGF GTLQHAMHMT QSAKIGHYMK VPPRLVAALL 120
121 FTSGIWSSLV NSAVTGWIMY HVR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [612-791] |
1 11 21 31 41 51
| | | | | |
1 DVCTSNAENN MTCRSPKTQF NSHLIWGLVG NHIFSSDGRY SFVMWFFLVG AVVSVVVYLL 60
61 QISFPKSSWK HVNPALLLGG AAQIPSVTGI NYSTWAAVAF CFNYLIRRGY YSWWKKYNLI 120
121 TAAAMDCGVA IAGLFIYFCV VYTGGSSNFS WWGTTVSSAG CDKKGCAHLS VSDISKPSGW 180
181
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
