YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|55775306, gi|...

General Information:
Name(s) found: gi|55775306 [NCBI NR]
gi|55296210 [NCBI NR]
gi|55295880 [NCBI NR]
gi|222634882 [NCBI NR]
gi|115466132 [NCBI NR]
gi|113594705 [NCBI NR]
Description(s) found:
Found 9 descriptions.
SHOW ALL
  • gi|55775306|ref|XP_550579.1| putative isp4 protein [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|55296210|dbj|BAD67928.1| putative isp4 protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|55295880|dbj|BAD67748.1| putative isp4 protein [Oryza sativa Japonica Group] [NCBI NR]
  • gi|222634882|gb|EEE65014.1| hypothetical protein OsJ_19965 [Oryza sativa Japonica Group] [NCBI NR]
  • gi|115466132|ref|NP_001056665.1| Os06g0127700 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113594705|dbj|BAF18579.1| Os06g0127700 [Oryza sativa Japonica Group] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 760 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSHHQEVQ EQGHGDGEEE EQDNSQITSP LLRSSMRLGS PEENSPVEQV ALTVPVGDDP  60
   61 ATPVLTFRIW VLGTASCVVL SFLNTFFWYR KEPLTVTAIS AQIAVVPLGR LMAAALPERV 120
  121 FFRGRPWEFT LNPGPFNVKE HVLITIFANA GAGSVFAINV ITAVRVFYGK RISFFVSLLV 180
  181 VLTSQVLGFG WAGIFRRYLV EPAAMWWPSN LVQVSLFRAL HEKERRSKGG MTRTQFFLVA 240
  241 FVCSFAYYIF PGYLFQMLTS LSWICWIFPK SVLAQQLGSG LHGLGIGAIG LDWSSISSYL 300
  301 GSPLASPWFA TANIAAGFFI YIYVITPIAY WINLYKAQNF PIFSDGLFTV TGQKYNISTI 360
  361 IDSQFHFDTK AYEKNGPLYI STFFSISYGL GFACLTATVV HVLLFHGSEI WQLSRSAFQD 420
  421 KKMDIHTKLM KRYKQVPEWW FISILIASVA ITMFTCEYYI EQLQLPWWGV LLACALAIFF 480
  481 TLPIGIVTAT TNQTPGLNII TEYIMGYLYP GRPVANMCFK VYGYIGPQQA LAFLQDFKLG 540
  541 HYMKIPPRTM FMAQVVGTLI AAFVYLGTAW WLMDTIPNIC NTELLPPGSP WTCPYDHLFY 600
  601 DASVIWGLIG PRRIFGDLGT YSAVNWFFLG GAIAPLLVWF AHKAFPGQKW ILLVNMPVLI 660
  661 AGISQMPPAT SVNYTAWIFV AFLSGYVVYK YRRDWWERHN YLLSGALDAG LAFMAVLLYL 720
  721 CLGLEKISLN WWGNDLDGCP LASCPIAEGI TVQGCPVASA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..135] FFAS03 1.0 RPB6
    2 View Details [136..341] MSA 1.20397 View MSA. No confident structure predictions are available.
    3 View Details [342..431] deduced N/A No confident structure predictions are available.
    4 View Details [432..575] MSA 1.208991 View MSA. No confident structure predictions are available.
    5 View Details [576..760] MSA 3.210992 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • transferase activity, transferring phosphorus-containing groups
    		•  2.01281538416671 bayes_pls_golite062009
  • binding
    		•  1.94407817286887 bayes_pls_golite062009
  • transferase activity
    		•  1.60649038965008 bayes_pls_golite062009
  • DNA-directed RNA polymerase activity
    		•  1.52156836827301 bayes_pls_golite062009
  • RNA polymerase activity
    		•  1.52156836827301 bayes_pls_golite062009
  • catalytic activity
    		•  0.853948963582441 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.703245359585675 bayes_pls_golite062009
  • DNA binding
    		•  0.542083591442061 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  0.405555358891152 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle