| Protein: | gi|55775306, gi|... |
| Organism: | Oryza sativa Japonica Group |
| Length: | 760 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55775306, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
777.0 | [0..1] | [759..1] |
|
Region A: Residues: [1-135] |
1 11 21 31 41 51
| | | | | |
1 MASSHHQEVQ EQGHGDGEEE EQDNSQITSP LLRSSMRLGS PEENSPVEQV ALTVPVGDDP 60
61 ATPVLTFRIW VLGTASCVVL SFLNTFFWYR KEPLTVTAIS AQIAVVPLGR LMAAALPERV 120
121 FFRGRPWEFT LNPGP
|
| Detection Method: |  |
| Confidence: | 1.0 |
| Match: | 1i3qF |
| Description: | RPB6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transferase activity, transferring phosphorus-containing groups | 2.01281538416671 | bayes_pls_golite062009 |
| binding | 1.94407817286887 | bayes_pls_golite062009 |
| transferase activity | 1.60649038965008 | bayes_pls_golite062009 |
| DNA-directed RNA polymerase activity | 1.52156836827301 | bayes_pls_golite062009 |
| RNA polymerase activity | 1.52156836827301 | bayes_pls_golite062009 |
| catalytic activity | 0.853948963582441 | bayes_pls_golite062009 |
| nucleic acid binding | 0.703245359585675 | bayes_pls_golite062009 |
| DNA binding | 0.542083591442061 | bayes_pls_golite062009 |
| nucleotidyltransferase activity | 0.405555358891152 | bayes_pls_golite062009 |
|
Region A: Residues: [136-341] |
1 11 21 31 41 51
| | | | | |
1 FNVKEHVLIT IFANAGAGSV FAINVITAVR VFYGKRISFF VSLLVVLTSQ VLGFGWAGIF 60
61 RRYLVEPAAM WWPSNLVQVS LFRALHEKER RSKGGMTRTQ FFLVAFVCSF AYYIFPGYLF 120
121 QMLTSLSWIC WIFPKSVLAQ QLGSGLHGLG IGAIGLDWSS ISSYLGSPLA SPWFATANIA 180
181 AGFFIYIYVI TPIAYWINLY KAQNFP
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [342-431] |
1 11 21 31 41 51
| | | | | |
1 IFSDGLFTVT GQKYNISTII DSQFHFDTKA YEKNGPLYIS TFFSISYGLG FACLTATVVH 60
61 VLLFHGSEIW QLSRSAFQDK KMDIHTKLMK
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [432-575] |
1 11 21 31 41 51
| | | | | |
1 RYKQVPEWWF ISILIASVAI TMFTCEYYIE QLQLPWWGVL LACALAIFFT LPIGIVTATT 60
61 NQTPGLNIIT EYIMGYLYPG RPVANMCFKV YGYIGPQQAL AFLQDFKLGH YMKIPPRTMF 120
121 MAQVVGTLIA AFVYLGTAWW LMDT
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [576-760] |
1 11 21 31 41 51
| | | | | |
1 IPNICNTELL PPGSPWTCPY DHLFYDASVI WGLIGPRRIF GDLGTYSAVN WFFLGGAIAP 60
61 LLVWFAHKAF PGQKWILLVN MPVLIAGISQ MPPATSVNYT AWIFVAFLSG YVVYKYRRDW 120
121 WERHNYLLSG ALDAGLAFMA VLLYLCLGLE KISLNWWGND LDGCPLASCP IAEGITVQGC 180
181 PVASA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
