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Protein Overview: isp4

General Information:
Name(s) found: isp4 / SPBC29B5.02c [Sanger Pombe]
Description(s) found:
Found 18 descriptions.
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  • OPT oligopeptide transporter family [Sanger Pombe]
    • Organism: Schizosaccharomyces pombe
    Length: 785 amino acids

    Gene Ontology:
    Cellular Component: integral to membrane [IEA]
    endoplasmic reticulum [IDALink to PubMed article]
    Biological Process: transmembrane transport [IEA]
    induction of conjugation upon nitrogen starvation [IEPLink to PubMed article]
    conjugation with cellular fusion [IMPLink to PubMed article]
    peptide transport [IEA]
    Molecular Function: transmembrane transporter activity [RCALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGSINESPI EEHMNDSPST KEKADSVDIS DYIVSHSDDS LSKDIKKDTK SFLDVEHGEI  60
   61 STVDEFEEDS PYPEVRAAVP PTDDPSMPCN TIRMWTIGLI YSTVGAAVNM FFSLRNPTVT 120
  121 LSVLISELLA YPALQIWDLI FPDREFRIGR LKFNFKPGPF NVKEHALIVV MSSVSFGNAY 180
  181 STDIILAQRV HYKQRFGFGY EICLTLATQL IGYGLAGLSR RLLVRPASML WPVNLVQCTL 240
  241 IKTLHRKDLR NAVANGWRIS PFRFFLYVFI ASFIWNWFPS YIFQALSLFA WVTWIRPNSP 300
  301 TVNQIFGEST GISILPMTFD WNQISAYILS PLMAPADALM NILLGVILFF WIVTPALNFT 360
  361 NTWYGDYLPI SSSGIIDHFG NSYNVTRILT KDATFDLDAY QNYSPIFMST TYALAFGLSF 420
  421 ASITSVIFHV ILYHGKEIYD RLRDPPAPDI HEKLMKAYDE VPFYWYLSVF LAFFGMMMGT 480
  481 IYGWKTETPW WVIIVGVIFS AVWFIPIGIV QAITNIQLGL NVFTEFIVGY MYPGRPLAMM 540
  541 IFKTVGYITM TQGLAFAADL KFGHYMKLPP RIMFYTQMIA TIWSCFVQIG VLDWALGNID 600
  601 NVCQADQPDN YTCPNATVFF NSSVIWGVIG PKRMFSGKNT YTGLQYFWLA GVLGTILFWA 660
  661 LWKKWPQKWW GQLNGPLIFG GTGYIPPATP VNYLAWSGIG LFFNYYLKKI FADWWQKYNF 720
  721 TLSAALDTGT QLSVIILFFC LQLPMVNFPD WWGNDGAFNT LDATGAAVRK LVNESAGEFF 780
  781 GPAEW

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..246] FFAS03 1.08 RPB6
    2 View Details [247..444] deduced N/A No confident structure predictions are available.
    3 View Details [445..597] MSA 1.221986 View MSA. No confident structure predictions are available.
    4 View Details [598..785] MSA 3.221994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • nucleic acid binding
    		•  0.703245359585675 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
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