YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	isp4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	93	0.93
Transmembrane Helix	94	114	0.82
Non-Cytoplasmic	115	120	0.70
Transmembrane Helix	121	141	0.63
Cytoplasmic	142	164	0.61
Transmembrane Helix	165	186	0.56
Non-Cytoplasmic	187	195	0.38
Transmembrane Helix	196	219	0.78
Cytoplasmic	220	263	0.61
Transmembrane Helix	264	285	0.86
Non-Cytoplasmic	286	303	0.78
Transmembrane Helix	304	322	0.64
Cytoplasmic	323	337	0.57
Transmembrane Helix	338	359	0.85
Non-Cytoplasmic	360	411	0.76
Transmembrane Helix	412	433	0.94
Cytoplasmic	434	462	0.77
Transmembrane Helix	463	483	0.95
Non-Cytoplasmic	484	489	0.65
Transmembrane Helix	490	510	0.91
Cytoplasmic	511	517	0.50
Transmembrane Helix	518	534	0.56
Non-Cytoplasmic	535	539	0.52
Transmembrane Helix	540	560	0.73
Cytoplasmic	561	572	0.72
Transmembrane Helix	573	592	0.91
Non-Cytoplasmic	593	611	0.77
Transmembrane Helix	612	630	0.69
Cytoplasmic	631	641	0.68
Transmembrane Helix	642	662	0.92
Non-Cytoplasmic	663	683	0.78
Transmembrane Helix	684	707	0.81
Cytoplasmic	708	723	0.75
Transmembrane Helix	724	746	0.79
Non-Cytoplasmic	747	785	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGSINESPI EEHMNDSPST KEKADSVDIS DYIVSHSDDS LSKDIKKDTK SFLDVEHGEI  60
   61 STVDEFEEDS PYPEVRAAVP PTDDPSMPCN TIRMWTIGLI YSTVGAAVNM FFSLRNPTVT 120
  121 LSVLISELLA YPALQIWDLI FPDREFRIGR LKFNFKPGPF NVKEHALIVV MSSVSFGNAY 180
  181 STDIILAQRV HYKQRFGFGY EICLTLATQL IGYGLAGLSR RLLVRPASML WPVNLVQCTL 240
  241 IKTLHRKDLR NAVANGWRIS PFRFFLYVFI ASFIWNWFPS YIFQALSLFA WVTWIRPNSP 300
  301 TVNQIFGEST GISILPMTFD WNQISAYILS PLMAPADALM NILLGVILFF WIVTPALNFT 360
  361 NTWYGDYLPI SSSGIIDHFG NSYNVTRILT KDATFDLDAY QNYSPIFMST TYALAFGLSF 420
  421 ASITSVIFHV ILYHGKEIYD RLRDPPAPDI HEKLMKAYDE VPFYWYLSVF LAFFGMMMGT 480
  481 IYGWKTETPW WVIIVGVIFS AVWFIPIGIV QAITNIQLGL NVFTEFIVGY MYPGRPLAMM 540
  541 IFKTVGYITM TQGLAFAADL KFGHYMKLPP RIMFYTQMIA TIWSCFVQIG VLDWALGNID 600
  601 NVCQADQPDN YTCPNATVFF NSSVIWGVIG PKRMFSGKNT YTGLQYFWLA GVLGTILFWA 660
  661 LWKKWPQKWW GQLNGPLIFG GTGYIPPATP VNYLAWSGIG LFFNYYLKKI FADWWQKYNF 720
  721 TLSAALDTGT QLSVIILFFC LQLPMVNFPD WWGNDGAFNT LDATGAAVRK LVNESAGEFF 780
  781 GPAEW