| Protein: | isp4 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 785 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for isp4.
| Description | E-value | Query Range |
Subject Range |
|
|
845.0 | [0..1] | [777..1] |
|
|
780.0 | [0..38] | [785..111] |
|
|
772.0 | [0..24] | [775..2] |
|
|
771.0 | [0..7] | [785..12] |
|
|
771.0 | [0..22] | [785..21] |
|
|
770.0 | [0..7] | [785..12] |
|
|
768.0 | [0..9] | [785..12] |
|
|
765.0 | [0..2] | [785..9] |
|
Region A: Residues: [1-246] |
1 11 21 31 41 51
| | | | | |
1 MIGSINESPI EEHMNDSPST KEKADSVDIS DYIVSHSDDS LSKDIKKDTK SFLDVEHGEI 60
61 STVDEFEEDS PYPEVRAAVP PTDDPSMPCN TIRMWTIGLI YSTVGAAVNM FFSLRNPTVT 120
121 LSVLISELLA YPALQIWDLI FPDREFRIGR LKFNFKPGPF NVKEHALIVV MSSVSFGNAY 180
181 STDIILAQRV HYKQRFGFGY EICLTLATQL IGYGLAGLSR RLLVRPASML WPVNLVQCTL 240
241 IKTLHR
|
| Detection Method: |  |
| Confidence: | 1.08 |
| Match: | 1i3qF |
| Description: | RPB6 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| nucleic acid binding | 0.703245359585675 | bayes_pls_golite062009 |
|
Region A: Residues: [247-444] |
1 11 21 31 41 51
| | | | | |
1 KDLRNAVANG WRISPFRFFL YVFIASFIWN WFPSYIFQAL SLFAWVTWIR PNSPTVNQIF 60
61 GESTGISILP MTFDWNQISA YILSPLMAPA DALMNILLGV ILFFWIVTPA LNFTNTWYGD 120
121 YLPISSSGII DHFGNSYNVT RILTKDATFD LDAYQNYSPI FMSTTYALAF GLSFASITSV 180
181 IFHVILYHGK EIYDRLRD
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [445-597] |
1 11 21 31 41 51
| | | | | |
1 PPAPDIHEKL MKAYDEVPFY WYLSVFLAFF GMMMGTIYGW KTETPWWVII VGVIFSAVWF 60
61 IPIGIVQAIT NIQLGLNVFT EFIVGYMYPG RPLAMMIFKT VGYITMTQGL AFAADLKFGH 120
121 YMKLPPRIMF YTQMIATIWS CFVQIGVLDW ALG
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [598-785] |
1 11 21 31 41 51
| | | | | |
1 NIDNVCQADQ PDNYTCPNAT VFFNSSVIWG VIGPKRMFSG KNTYTGLQYF WLAGVLGTIL 60
61 FWALWKKWPQ KWWGQLNGPL IFGGTGYIPP ATPVNYLAWS GIGLFFNYYL KKIFADWWQK 120
121 YNFTLSAALD TGTQLSVIIL FFCLQLPMVN FPDWWGNDGA FNTLDATGAA VRKLVNESAG 180
181 EFFGPAEW
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
